LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_013968
hsa-miR-125a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029050
Biotype: transcript isomorph
Gene id: XLOC_013968
Gene Name: XLOC_013968
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
140-160
0.032
0
6mer
1563-1585
0.003
1
7mer
217-239
0.002
1
6mer
1179-1200
0.001
0
ACVR2B-AS1
hsa-miR-125a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441531
Biotype: antisense
Gene id: ENSG00000229589
Gene Name: ACVR2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1952-1979
0.031
4
7mer
1770-1791
0.005
0
7mer
1323-1350
0.002
0
TTN-AS1
hsa-miR-125a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589355
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-389
0.038
4
SLX1B-SULT1A4
hsa-miR-125a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_037609.1
Biotype: sense
Gene id: NR_037609.1 (gene)
Gene Name: SLX1B-SULT1A4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-36
0.026
0
8mer
289-309
0.007
0
7mer
1172-1196
0.003
1
6mer
262-285
0.002
1
XLOC_008506
hsa-miR-125a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017838
Biotype: transcript isomorph
Gene id: XLOC_008506
Gene Name: XLOC_008506
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4175-4196
0.014
3
7mer
3874-3897
0.012
1
7mer
2260-2267
0.002
1
6mer
4103-4119
0.002
0
6mer
879-905
0.002
1
6mer
2452-2457
0.002
3
6mer
1994-2012
0.001
0
6mer
2645-2661
0.001
1
6mer
2549-2565
0.001
0
AC007966.1
hsa-miR-125a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110214.1
Biotype: antisense
Gene id: NR_110214.1 (gene)
Gene Name: AC007966.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-805
0.038
0
RP11-669N7.3
hsa-miR-125a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542578
Biotype: lincRNA
Gene id: ENSG00000256699
Gene Name: RP11-669N7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
986-1008
0.038
0
LINC00664
hsa-miR-125a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596718
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1436-1455
0.019
0
7mer
39-64
0.016
1
6mer
1685-1689
0.002
1
RP11-150O12.3
hsa-miR-125a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519691
Biotype: lincRNA
Gene id: ENSG00000254290
Gene Name: RP11-150O12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
593-617
0.021
1
6mer
1775-1796
0.006
5
6mer
257-264
0.003
0
6mer
166-187
0.003
1
6mer
779-806
0.002
1
6mer
1704-1727
0.002
1
6mer
906-924
0.001
Not Conserved
HOXC-AS3
hsa-miR-125a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000513165
Biotype: antisense
Gene id: ENSG00000251151
Gene Name: HOXC-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
483-508
0.038
6
RP11-19O2.2
hsa-miR-125a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509037
Biotype: antisense
Gene id: ENSG00000250448
Gene Name: RP11-19O2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
87-102
0.038
1
CTD-2308G16.1
hsa-miR-125a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558994
Biotype: sense_intronic
Gene id: ENSG00000259377
Gene Name: CTD-2308G16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
206-213
0.038
1
RP11-77H9.2
hsa-miR-125a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565934
Biotype: antisense
Gene id: ENSG00000260276
Gene Name: RP11-77H9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
615-634
0.035
3
6mer
1976-2000
0.003
0
CTD-2245F17.3
hsa-miR-125a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597550
Biotype: lincRNA
Gene id: ENSG00000269051
Gene Name: CTD-2245F17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-385
0.019
0
7mer
379-402
0.010
2
6mer
190-217
0.004
1
6mer
451-471
0.004
2
CNTN4-AS1
hsa-miR-125a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000442749
Biotype: antisense
Gene id: ENSG00000237990
Gene Name: CNTN4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1010-1029
0.035
8
6mer
1362-1387
0.003
3
RP11-85O21.2
hsa-miR-125a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000453529
Biotype: antisense
Gene id: ENSG00000236668
Gene Name: RP11-85O21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1333-1351
0.013
1
6mer
190-194
0.009
5
6mer
1810-1830
0.008
9
6mer
1673-1696
0.003
5
6mer
868-890
0.002
1
6mer
1169-1186
0.002
5
RP11-310E22.4
hsa-miR-125a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451737
Biotype: antisense
Gene id: ENSG00000234026
Gene Name: RP11-310E22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
199-226
0.027
1
7mer
333-346
0.010
1
XLOC_008337
hsa-miR-125a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018082
Biotype: transcript isomorph
Gene id: XLOC_008337
Gene Name: XLOC_008337
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-118
0.037
1
RP11-822E23.8
hsa-miR-125a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000468381
Biotype: processed_transcript
Gene id: ENSG00000272780
Gene Name: RP11-822E23.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-140
0.022
0
7mer
306-325
0.006
0
7mer
1633-1653
0.005
1
6mer
448-471
0.002
Not Conserved
6mer
1361-1374
0.002
0
RP4-657D16.3
hsa-miR-125a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000586761
Biotype: antisense
Gene id: ENSG00000266993
Gene Name: RP4-657D16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
65-92
0.037
1
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