LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000978
hsa-miR-125a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001640
Biotype: transcript isomorph
Gene id: XLOC_000978
Gene Name: XLOC_000978
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-563
0.039
0
AC018866.1
hsa-miR-125a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421820
Biotype: lincRNA
Gene id: ENSG00000229774
Gene Name: AC018866.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
351-367
0.035
0
6mer
313-336
0.004
1
RP11-458K10.1
hsa-miR-125a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000471672
Biotype: lincRNA
Gene id: ENSG00000242072
Gene Name: RP11-458K10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
260-267
0.039
0
XLOC_002335
hsa-miR-125a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003408
Biotype: transcript isomorph
Gene id: XLOC_002335
Gene Name: XLOC_002335
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-553
0.039
1
LINC01475
hsa-miR-125a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000548010
Biotype: lincRNA
Gene id: ENSG00000257582
Gene Name: LINC01475
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
565-572
0.039
3
CTA-445C9.15
hsa-miR-125a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000564772
Biotype: lincRNA
Gene id: ENSG00000260065
Gene Name: CTA-445C9.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-186
0.039
1
RP11-758H9.2
hsa-miR-125a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000611877
Biotype: lincRNA
Gene id: ENSG00000273702
Gene Name: RP11-758H9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
801-807
0.039
4
RP11-768B22.2
hsa-miR-125a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515789
Biotype: antisense
Gene id: ENSG00000248571
Gene Name: RP11-768B22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1934-1951
0.024
1
7mer
334-355
0.007
0
6mer
125-135
0.004
0
6mer
925-951
0.003
2
6mer
987-1014
0.001
1
XLOC_003794
hsa-miR-125a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008347
Biotype: transcript isomorph
Gene id: XLOC_003794
Gene Name: XLOC_003794
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
921-934
0.021
2
7mer
656-663
0.017
0
RP11-407B7.1
hsa-miR-125a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593326
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-157
0.038
0
LINC00846
hsa-miR-125a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000334165
Biotype: lincRNA
Gene id: ENSG00000186842
Gene Name: LINC00846
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-342
0.027
1
6mer
844-866
0.006
1
6mer
1369-1389
0.003
0
6mer
1187-1206
0.003
0
RP11-1007I13.4
hsa-miR-125a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000583636
Biotype: processed_transcript
Gene id: ENSG00000266560
Gene Name: RP11-1007I13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
690-708
0.033
1
8mer
348-373
0.006
0
RP11-78F17.1
hsa-miR-125a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583497
Biotype: lincRNA
Gene id: ENSG00000263551
Gene Name: RP11-78F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-40
0.038
2
RP11-44M6.7
hsa-miR-125a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000485071
Biotype: retained_intron
Gene id: ENSG00000274272
Gene Name: RP11-44M6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-60
0.021
0
8mer
103-114
0.011
0
7mer
3769-3794
0.002
Not Conserved
6mer
3607-3621
0.001
2
6mer
3671-3693
0.001
6
6mer
3927-3944
0.001
0
6mer
1025-1047
0.001
0
RP11-105N14.3
hsa-miR-125a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426870
Biotype: lincRNA
Gene id: ENSG00000236193
Gene Name: RP11-105N14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-257
0.033
1
6mer
396-414
0.006
5
XLOC_002909
hsa-miR-125a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005388
Biotype: transcript isomorph
Gene id: XLOC_002909
Gene Name: XLOC_002909
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1974-1998
0.013
1
7mer
3115-3120
0.011
0
7mer
1661-1682
0.008
Not Conserved
7mer
2259-2267
0.004
0
6mer
1196-1200
0.002
1
SHANK3
hsa-miR-125a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000262795
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3990-4014
0.015
11
7mer
1021-1042
0.014
10
7mer
4261-4288
0.006
11
6mer
911-928
0.002
0
6mer
3868-3892
0.001
1
6mer
5391-5417
0.000
3
RP1-45N11.1
hsa-miR-125a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000569865
Biotype: lincRNA
Gene id: ENSG00000260271
Gene Name: RP1-45N11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1339-1360
0.035
7
6mer
1161-1170
0.003
1
XLOC_013779
hsa-miR-125a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028429
Biotype: transcript isomorph
Gene id: XLOC_013779
Gene Name: XLOC_013779
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3064-3085
0.005
1
7mer
349-374
0.004
Not Conserved
6mer
2654-2680
0.002
1
8mer
1525-1551
0.002
Not Conserved
6mer
71-95
0.002
Not Conserved
6mer
2801-2827
0.002
0
6mer
163-187
0.002
Not Conserved
6mer
511-535
0.002
Not Conserved
6mer
2505-2525
0.002
1
6mer
670-694
0.001
Not Conserved
6mer
2456-2482
0.001
1
6mer
1917-1943
0.001
1
6mer
2554-2580
0.001
0
6mer
2605-2631
0.001
0
6mer
2211-2231
0.001
1
6mer
1966-1990
0.001
1
6mer
2015-2041
0.001
1
7mer
1672-1699
0.001
Not Conserved
6mer
1329-1353
0.001
0
6mer
1476-1502
0.001
0
6mer
2113-2139
0.001
0
6mer
2357-2383
0.001
Not Conserved
6mer
1378-1403
0.001
Not Conserved
6mer
2064-2090
0.001
0
6mer
1868-1894
0.000
0
6mer
1769-1795
0.000
Not Conserved
6mer
1623-1643
0.000
Not Conserved
6mer
2260-2287
0.000
Not Conserved
RP11-64D24.4
hsa-miR-125a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534904
Biotype: antisense
Gene id: ENSG00000256195
Gene Name: RP11-64D24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3176-3198
0.026
1
8mer
2277-2298
0.006
0
7mer
2201-2228
0.004
1
6mer
944-948
0.002
0
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