LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
HOXA-AS2
hsa-miR-125a-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000517641
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-173
0.040
5
RP11-666A8.9
hsa-miR-125a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588104
Biotype: antisense
Gene id: ENSG00000267078
Gene Name: RP11-666A8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
118-144
0.032
1
8mer
789-800
0.007
1
6mer
432-455
0.001
1
AC007966.1
hsa-miR-125a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421998
Biotype: antisense
Gene id: ENSG00000226747
Gene Name: AC007966.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-805
0.040
0
XLOC_004699
hsa-miR-125a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010231
Biotype: transcript isomorph
Gene id: XLOC_004699
Gene Name: XLOC_004699
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-63
0.040
1
RP11-426C22.7
hsa-miR-125a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000620963
Biotype: lincRNA
Gene id: ENSG00000273582
Gene Name: RP11-426C22.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-237
0.032
1
7mer
97-122
0.008
0
LINC00421
hsa-miR-125a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-664
0.028
0
6mer
181-201
0.012
0
XLOC_013679
hsa-miR-125a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027883
Biotype: transcript isomorph
Gene id: XLOC_013679
Gene Name: XLOC_013679
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3902-3913
0.039
0
XLOC_010290
hsa-miR-125a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-664
0.028
0
6mer
181-201
0.011
0
XLOC_002214
hsa-miR-125a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004339
Biotype: transcript isomorph
Gene id: XLOC_002214
Gene Name: XLOC_002214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-372
0.019
0
6mer
1419-1445
0.009
1
6mer
1839-1844
0.007
0
6mer
1736-1762
0.005
0
XLOC_010582
hsa-miR-125a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021980
Biotype: transcript isomorph
Gene id: XLOC_010582
Gene Name: XLOC_010582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3970-3995
0.030
3
7mer
546-564
0.009
Not Conserved
RP5-991G20.2
hsa-miR-125a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000624370
Biotype: antisense
Gene id: ENSG00000259209
Gene Name: RP5-991G20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
847-853
0.035
4
6mer
581-600
0.004
3
XLOC_006469
hsa-miR-125a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014311
Biotype: transcript isomorph
Gene id: XLOC_006469
Gene Name: XLOC_006469
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-41
0.039
1
XLOC_011300
hsa-miR-125a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023454
Biotype: transcript isomorph
Gene id: XLOC_011300
Gene Name: XLOC_011300
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
143-166
0.039
1
XLOC_013010
hsa-miR-125a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
935-951
0.039
0
XLOC_002543
hsa-miR-125a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004629
Biotype: transcript isomorph
Gene id: XLOC_002543
Gene Name: XLOC_002543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3040-3059
0.022
0
8mer
2660-2685
0.006
Not Conserved
7mer
2351-2377
0.004
1
6mer
133-152
0.004
Not Conserved
6mer
658-668
0.003
1
LINC00359
hsa-miR-125a-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000442322
Biotype: lincRNA
Gene id: ENSG00000243300
Gene Name: LINC00359
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
687-713
0.039
1
NARF-IT1
hsa-miR-125a-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584012
Biotype: sense_intronic
Gene id: ENSG00000266236
Gene Name: NARF-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
85-108
0.039
1
RP11-349P19.1
hsa-miR-125a-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000424274
Biotype: antisense
Gene id: ENSG00000232120
Gene Name: RP11-349P19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-239
0.039
3
RP11-421P23.2
hsa-miR-125a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517994
Biotype: lincRNA
Gene id: ENSG00000254040
Gene Name: RP11-421P23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-62
0.039
3
RP11-146F11.1
hsa-miR-125a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568500
Biotype: antisense
Gene id: ENSG00000261840
Gene Name: RP11-146F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-850
0.032
6
7mer
1022-1048
0.007
3
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