LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
HECW1-IT1
hsa-miR-125a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000322220
Biotype: sense_intronic
Gene id: ENSG00000181211
Gene Name: HECW1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-316
0.033
5
6mer
111-127
0.004
1
6mer
356-373
0.004
4
C1orf132
hsa-miR-125a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14796-14821
0.006
1
7mer
1062-1083
0.006
3
8mer
2872-2889
0.006
1
7mer
11076-11101
0.004
3
7mer
11175-11200
0.003
1
7mer
13684-13704
0.002
0
6mer
3794-3809
0.002
3
7mer
4954-4969
0.002
1
7mer
5393-5420
0.001
Not Conserved
6mer
3391-3407
0.001
3
6mer
11444-11469
0.001
0
6mer
10509-10530
0.001
1
6mer
11939-11962
0.001
3
6mer
5537-5561
0.001
1
6mer
10914-10935
0.001
1
8mer
10479-10505
0.001
1
6mer
7103-7120
0.001
0
6mer
9109-9136
0.001
1
6mer
6987-7013
0.001
1
XLOC_012427
hsa-miR-125a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025599
Biotype: transcript isomorph
Gene id: XLOC_012427
Gene Name: XLOC_012427
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
769-794
0.039
0
6mer
2007-2028
0.002
Not Conserved
RP11-764K9.1
hsa-miR-125a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1480-1501
0.029
0
6mer
337-358
0.010
0
6mer
1350-1372
0.001
Not Conserved
RP5-944M2.3
hsa-miR-125a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545767
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1393-1416
0.040
1
NPHP3-ACAD11
hsa-miR-125a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3105-3132
0.024
1
7mer
7075-7094
0.012
8
6mer
2365-2369
0.002
5
6mer
5153-5177
0.002
6
6mer
2983-3001
0.001
5
XLOC_005406
hsa-miR-125a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011907
Biotype: transcript isomorph
Gene id: XLOC_005406
Gene Name: XLOC_005406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-117
0.040
0
RP11-106D4.2
hsa-miR-125a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000612833
Biotype: sense_intronic
Gene id: ENSG00000276337
Gene Name: RP11-106D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3310-3337
0.024
1
8mer
2809-2829
0.016
0
6mer
1332-1354
0.001
1
RP5-940F7.2
hsa-miR-125a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438371
Biotype: lincRNA
Gene id: ENSG00000237845
Gene Name: RP5-940F7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-416
0.040
1
AC018866.1
hsa-miR-125a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444963
Biotype: lincRNA
Gene id: ENSG00000229774
Gene Name: AC018866.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
257-273
0.036
0
6mer
219-242
0.004
1
RP11-12M5.4
hsa-miR-125a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442108
Biotype: lincRNA
Gene id: ENSG00000231966
Gene Name: RP11-12M5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-161
0.040
1
XLOC_010743
hsa-miR-125a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022133
Biotype: transcript isomorph
Gene id: XLOC_010743
Gene Name: XLOC_010743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1439-1461
0.022
1
8mer
2498-2516
0.007
1
8mer+mismatch
4993-5015
0.003
1
6mer
630-654
0.002
1
7mer
3867-3883
0.002
1
6mer
2133-2147
0.002
3
6mer
6575-6593
0.001
0
6mer
5606-5632
0.001
0
KIF9-AS1
hsa-miR-125a-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_033373.1
Biotype: antisense
Gene id: NR_033373.1 (gene)
Gene Name: KIF9-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2305-2321
0.018
0
8mer
587-612
0.016
3
6mer
2397-2423
0.003
1
7mer
541-555
0.003
0
CTD-2144E22.8
hsa-miR-125a-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568121
Biotype: lincRNA
Gene id: ENSG00000260854
Gene Name: CTD-2144E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-128
0.040
1
XLOC_006786
hsa-miR-125a-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014687
Biotype: transcript isomorph
Gene id: XLOC_006786
Gene Name: XLOC_006786
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-507
0.040
0
PSMG3-AS1
hsa-miR-125a-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437621
Biotype: lincRNA
Gene id: ENSG00000230487
Gene Name: PSMG3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5418-5432
0.015
0
7mer
5451-5462
0.007
0
8mer
3480-3503
0.006
Not Conserved
7mer
852-873
0.004
1
6mer
5331-5355
0.003
1
6mer
4505-4531
0.002
0
7mer
3029-3055
0.001
0
6mer
2097-2121
0.001
1
6mer
3631-3650
0.001
1
6mer
3942-3962
0.001
0
6mer
3948-3973
0.000
1
XLOC_012382
hsa-miR-125a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025133
Biotype: transcript isomorph
Gene id: XLOC_012382
Gene Name: XLOC_012382
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2786-2808
0.040
1
RP11-314O13.1
hsa-miR-125a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562231
Biotype: lincRNA
Gene id: ENSG00000260896
Gene Name: RP11-314O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-194
0.040
0
XLOC_011603
hsa-miR-125a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023825
Biotype: transcript isomorph
Gene id: XLOC_011603
Gene Name: XLOC_011603
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1886-1908
0.024
1
7mer
2299-2315
0.016
2
PTOV1-AS1
hsa-miR-125a-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600742
Biotype: antisense
Gene id: ENSG00000268006
Gene Name: PTOV1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-367
0.029
2
7mer
2954-2973
0.009
0
6mer
3106-3127
0.003
1
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