LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
CTB-47B11.3
hsa-miR-125a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508443
Biotype: antisense
Gene id: ENSG00000248544
Gene Name: CTB-47B11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-334
0.026
1
8mer
991-1011
0.010
1
6mer
676-693
0.003
1
6mer
849-853
0.003
2
KDM4A-AS1
hsa-miR-125a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453015
Biotype: antisense
Gene id: ENSG00000236200
Gene Name: KDM4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-174
0.042
2
ZBED3-AS1
hsa-miR-125a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515356
Biotype: antisense
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
171-183
0.026
1
7mer
1428-1453
0.016
1
RP11-290K4.1
hsa-miR-125a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000491909
Biotype: lincRNA
Gene id: ENSG00000239716
Gene Name: RP11-290K4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
133-154
0.042
1
FAM66C
hsa-miR-125a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535567
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-104
0.042
1
XLOC_004166
hsa-miR-125a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008650
Biotype: transcript isomorph
Gene id: XLOC_004166
Gene Name: XLOC_004166
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3000-3005
0.014
1
7mer
1778-1802
0.014
8
7mer
2305-2325
0.009
2
7mer
2217-2234
0.003
0
6mer
293-297
0.002
Not Conserved
RP11-616M22.7
hsa-miR-125a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561649
Biotype: lincRNA
Gene id: ENSG00000260710
Gene Name: RP11-616M22.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-78
0.041
1
XLOC_007324
hsa-miR-125a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015947
Biotype: transcript isomorph
Gene id: XLOC_007324
Gene Name: XLOC_007324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1607-1630
0.035
0
6mer
122-145
0.007
0
RP11-421E14.2
hsa-miR-125a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581917
Biotype: sense_intronic
Gene id: ENSG00000264895
Gene Name: RP11-421E14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
866-892
0.031
0
8mer
1059-1072
0.011
1
XLOC_001199
hsa-miR-125a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001815
Biotype: transcript isomorph
Gene id: XLOC_001199
Gene Name: XLOC_001199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
904-925
0.020
1
7mer
52-64
0.010
3
6mer
471-496
0.004
3
6mer
2771-2775
0.002
0
6mer
2215-2236
0.002
3
6mer
1593-1620
0.001
1
6mer
1496-1520
0.001
4
6mer
3970-3993
0.001
1
6mer
897-919
0.000
0
XLOC_010261
hsa-miR-125a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020997
Biotype: transcript isomorph
Gene id: XLOC_010261
Gene Name: XLOC_010261
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-257
0.041
1
XLOC_007710
hsa-miR-125a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1480-1501
0.030
0
6mer
337-358
0.010
0
6mer
1350-1372
0.001
Not Conserved
MIR223
hsa-miR-125a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000618234
Biotype: antisense
Gene id: ENSG00000274536
Gene Name: MIR223
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
378-404
0.041
Not Conserved
XLOC_008454
hsa-miR-125a-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018162
Biotype: transcript isomorph
Gene id: XLOC_008454
Gene Name: XLOC_008454
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-509
0.026
1
7mer
186-205
0.015
1
AC005532.5
hsa-miR-125a-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447039
Biotype: lincRNA
Gene id: ENSG00000230825
Gene Name: AC005532.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
236-255
0.038
1
6mer
360-377
0.003
3
PAX8-AS1
hsa-miR-125a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2918-2937
0.006
1
8mer
3195-3214
0.005
2
7mer
10722-10732
0.005
0
8mer
8545-8566
0.003
0
6mer
120-132
0.003
Not Conserved
6mer
8931-8954
0.003
6
7mer
9106-9125
0.003
0
7mer
1440-1466
0.003
0
6mer
252-276
0.002
1
6mer
11473-11498
0.002
1
6mer
4208-4235
0.001
1
6mer
6472-6498
0.001
2
6mer
6081-6093
0.001
0
6mer
7267-7289
0.001
Not Conserved
6mer
2745-2764
0.001
1
FAM27L
hsa-miR-125a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000426869
Biotype: lincRNA
Gene id: ENSG00000178130
Gene Name: FAM27L
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-668
0.041
1
RP11-855A2.3
hsa-miR-125a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577385
Biotype: antisense
Gene id: ENSG00000266717
Gene Name: RP11-855A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
205-229
0.041
0
RP11-285G1.2
hsa-miR-125a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436877
Biotype: antisense
Gene id: ENSG00000234504
Gene Name: RP11-285G1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1294-1320
0.029
1
7mer
1315-1335
0.006
0
6mer
204-213
0.004
1
6mer
773-793
0.002
1
XLOC_003281
hsa-miR-125a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006680
Biotype: transcript isomorph
Gene id: XLOC_003281
Gene Name: XLOC_003281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
781-803
0.022
0
9mer
887-910
0.018
0
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