LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125a-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-527N22.1
hsa-miR-125a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000624599
Biotype: TEC
Gene id: ENSG00000253123
Gene Name: RP11-527N22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
757-780
0.028
1
7mer
3663-3677
0.008
Not Conserved
8mer
1488-1500
0.004
0
7mer
735-761
0.003
0
6mer
1693-1716
0.001
0
AP000472.2
hsa-miR-125a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000420255
Biotype: lincRNA
Gene id: ENSG00000233215
Gene Name: AP000472.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-342
0.043
0
MLIP-AS1
hsa-miR-125a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434196
Biotype: antisense
Gene id: ENSG00000235050
Gene Name: MLIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-219
0.043
0
AC007966.1
hsa-miR-125a-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110215.1
Biotype: antisense
Gene id: NR_110215.1 (gene)
Gene Name: AC007966.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-805
0.043
0
XLOC_002766
hsa-miR-125a-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006158
Biotype: transcript isomorph
Gene id: XLOC_002766
Gene Name: XLOC_002766
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-99
0.043
1
RP5-845O24.8
hsa-miR-125a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438401
Biotype: lincRNA
Gene id: ENSG00000228338
Gene Name: RP5-845O24.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-348
0.024
1
7mer
184-207
0.012
Not Conserved
7mer
342-367
0.007
Not Conserved
AC004840.9
hsa-miR-125a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000313156
Biotype: lincRNA
Gene id: ENSG00000175873
Gene Name: AC004840.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1426-1453
0.038
0
7mer
710-733
0.003
0
6mer
1293-1314
0.001
0
RP5-944M2.3
hsa-miR-125a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540774
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1272-1295
0.043
1
FAM66C
hsa-miR-125a-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541558
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1249-1267
0.029
1
7mer
133-144
0.010
0
6mer
836-850
0.004
0
FLJ42969
hsa-miR-125a-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514926
Biotype: lincRNA
Gene id: ENSG00000248599
Gene Name: FLJ42969
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
80-98
0.037
0
7mer
1586-1607
0.005
0
XLOC_012006
hsa-miR-125a-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024726
Biotype: transcript isomorph
Gene id: XLOC_012006
Gene Name: XLOC_012006
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
944-967
0.042
1
RP11-4O1.2
hsa-miR-125a-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563434
Biotype: sense_overlapping
Gene id: ENSG00000259953
Gene Name: RP11-4O1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4453-4476
0.023
3
7mer
261-285
0.015
0
7mer
2117-2132
0.004
3
AC007966.1
hsa-miR-125a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110216.1
Biotype: antisense
Gene id: NR_110216.1 (gene)
Gene Name: AC007966.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-805
0.042
0
RP5-999L4.2
hsa-miR-125a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000616029
Biotype: lincRNA
Gene id: ENSG00000275142
Gene Name: RP5-999L4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-58
0.042
1
CTD-2012K14.8
hsa-miR-125a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000613438
Biotype: antisense
Gene id: ENSG00000276075
Gene Name: CTD-2012K14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
147-173
0.037
3
6mer
485-494
0.006
5
XLOC_012922
hsa-miR-125a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026870
Biotype: transcript isomorph
Gene id: XLOC_012922
Gene Name: XLOC_012922
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
212-238
0.041
1
6mer
63-83
0.001
Not Conserved
XLOC_001671
hsa-miR-125a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003872
Biotype: transcript isomorph
Gene id: XLOC_001671
Gene Name: XLOC_001671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9496-9514
0.015
0
7mer
7015-7021
0.006
0
6mer
10210-10230
0.005
0
7mer
4206-4224
0.003
Not Conserved
7mer
7580-7597
0.002
Not Conserved
7mer
1340-1366
0.002
Not Conserved
6mer
9651-9672
0.002
0
6mer
837-858
0.002
Not Conserved
6mer
9066-9091
0.001
Not Conserved
6mer
7146-7168
0.001
0
6mer
7312-7338
0.001
Not Conserved
6mer
3767-3787
0.001
Not Conserved
6mer
2150-2169
0.001
Not Conserved
RP11-288L9.4
hsa-miR-125a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430683
Biotype: antisense
Gene id: ENSG00000225886
Gene Name: RP11-288L9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
437-451
0.042
0
RP11-309H21.3
hsa-miR-125a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
400-419
0.031
0
6mer
2850-2864
0.010
0
RP11-104J23.1
hsa-miR-125a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617328
Biotype: antisense
Gene id: ENSG00000275944
Gene Name: RP11-104J23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1597-1619
0.021
0
7mer
1466-1488
0.017
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept