LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_014110
hsa-miR-125a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029171
Biotype: transcript isomorph
Gene id: XLOC_014110
Gene Name: XLOC_014110
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2800-2819
0.004
1
6mer
650-676
0.004
1
7mer
3745-3767
0.003
0
6mer
4303-4322
0.003
1
6mer
4166-4189
0.002
1
6mer
1096-1110
0.002
2
6mer
4115-4132
0.002
1
6mer
4005-4022
0.002
1
6mer
3987-4010
0.002
0
6mer
4085-4107
0.001
0
6mer
3919-3942
0.001
1
6mer
3937-3961
0.001
1
6mer
3810-3832
0.001
0
6mer
4074-4090
0.001
0
6mer
3712-3734
0.001
1
6mer
3792-3815
0.001
1
6mer
3890-3913
0.001
1
6mer
3781-3797
0.001
0
6mer
3908-3924
0.001
1
6mer
3943-3961
0.001
0
6mer
3956-3980
0.001
0
6mer
4127-4143
0.001
0
6mer
3878-3900
0.001
1
6mer
3975-3992
0.001
Not Conserved
6mer
3378-3404
0.001
0
6mer
3962-3980
0.001
Not Conserved
6mer
3827-3844
0.001
0
6mer
1876-1900
0.001
Not Conserved
6mer
917-942
0.001
0
6mer
3839-3855
0.001
0
6mer
4050-4072
0.001
0
6mer
3752-3773
0.001
0
6mer
1507-1523
0.001
Not Conserved
XLOC_003447
hsa-miR-125a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008751
Biotype: transcript isomorph
Gene id: XLOC_003447
Gene Name: XLOC_003447
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-367
0.036
1
6mer
184-188
0.008
1
LINC01330
hsa-miR-125a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481578
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
742-763
0.015
Not Conserved
7mer
1055-1079
0.014
1
7mer
2196-2201
0.012
0
7mer
1340-1348
0.004
0
RP11-165M1.3
hsa-miR-125a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569490
Biotype: antisense
Gene id: ENSG00000261394
Gene Name: RP11-165M1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
242-259
0.039
2
6mer
143-162
0.003
1
6mer
99-123
0.002
1
LINC00843
hsa-miR-125a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444438
Biotype: lincRNA
Gene id: ENSG00000178440
Gene Name: LINC00843
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-393
0.044
1
AC096669.3
hsa-miR-125a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439893
Biotype: lincRNA
Gene id: ENSG00000224568
Gene Name: AC096669.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-279
0.044
1
LINC01447
hsa-miR-125a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429010
Biotype: lincRNA
Gene id: ENSG00000236078
Gene Name: LINC01447
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2057-2063
0.021
0
8mer
1847-1853
0.019
0
6mer
452-473
0.002
1
6mer
1442-1461
0.002
0
XLOC_006281
hsa-miR-125a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013616
Biotype: transcript isomorph
Gene id: XLOC_006281
Gene Name: XLOC_006281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-296
0.039
2
6mer
621-635
0.004
1
LINC00488
hsa-miR-125a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494582
Biotype: lincRNA
Gene id: ENSG00000214381
Gene Name: LINC00488
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1025-1051
0.031
1
7mer
138-159
0.007
0
6mer
2448-2461
0.005
0
6mer
213-233
0.002
0
RP11-95O2.1
hsa-miR-125a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589715
Biotype: lincRNA
Gene id: ENSG00000267651
Gene Name: RP11-95O2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1673-1694
0.034
2
7mer
2037-2058
0.007
1
6mer
1216-1240
0.003
1
XLOC_011209
hsa-miR-125a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023346
Biotype: transcript isomorph
Gene id: XLOC_011209
Gene Name: XLOC_011209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
427-454
0.024
5
7mer
219-235
0.013
2
6mer
53-73
0.007
3
RP11-434I12.3
hsa-miR-125a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518355
Biotype: lincRNA
Gene id: ENSG00000253339
Gene Name: RP11-434I12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
307-326
0.043
7
XLOC_008063
hsa-miR-125a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017243
Biotype: transcript isomorph
Gene id: XLOC_008063
Gene Name: XLOC_008063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4792-4816
0.021
1
7mer
3501-3526
0.011
2
7mer
3905-3919
0.008
1
7mer
3111-3132
0.002
1
6mer
894-915
0.002
0
RP11-481J2.2
hsa-miR-125a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567448
Biotype: lincRNA
Gene id: ENSG00000260186
Gene Name: RP11-481J2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
712-738
0.024
2
8mer
506-525
0.017
0
6mer
189-216
0.003
0
XLOC_000741
hsa-miR-125a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001425
Biotype: transcript isomorph
Gene id: XLOC_000741
Gene Name: XLOC_000741
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1229-1235
0.043
1
LOC284344
hsa-miR-125a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_033888.1
Biotype: sense
Gene id: NR_033888.1 (gene)
Gene Name: LOC284344
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-254
0.043
1
RP11-386J22.3
hsa-miR-125a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000622201
Biotype: sense_intronic
Gene id: ENSG00000274421
Gene Name: RP11-386J22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
400-421
0.043
1
RP11-672L10.6
hsa-miR-125a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000610185
Biotype: lincRNA
Gene id: ENSG00000273355
Gene Name: RP11-672L10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-425
0.043
1
RP11-700H6.2
hsa-miR-125a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000512717
Biotype: lincRNA
Gene id: ENSG00000251665
Gene Name: RP11-700H6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-65
0.043
1
RP11-731N10.1
hsa-miR-125a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522123
Biotype: lincRNA
Gene id: ENSG00000253836
Gene Name: RP11-731N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
265-276
0.043
0
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