LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP5-828H9.1
hsa-miR-125a-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000430097
Biotype: lincRNA
Gene id: ENSG00000230563
Gene Name: RP5-828H9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-160
0.021
3
7mer
1430-1448
0.016
1
7mer
944-963
0.003
2
6mer
174-197
0.003
1
6mer
1635-1652
0.003
1
PCBP1-AS1
hsa-miR-125a-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439670
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2037-2063
0.036
0
7mer
1854-1874
0.007
1
6mer
1392-1417
0.002
0
CTD-2616J11.3
hsa-miR-125a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000532473
Biotype: antisense
Gene id: ENSG00000254760
Gene Name: CTD-2616J11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-449
0.042
6
6mer
129-133
0.003
0
FAM157A
hsa-miR-125a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437428
Biotype: lincRNA
Gene id: ENSG00000236438
Gene Name: FAM157A
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
803-828
0.029
0
6mer
345-368
0.010
0
6mer
568-586
0.007
0
XLOC_003440
hsa-miR-125a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1572-1593
0.029
1
6mer
204-224
0.007
0
6mer
2403-2430
0.003
1
6mer
1250-1273
0.002
1
6mer
893-920
0.002
0
6mer
1683-1706
0.002
1
RP11-867G23.4
hsa-miR-125a-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528650
Biotype: antisense
Gene id: ENSG00000254452
Gene Name: RP11-867G23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
244-267
0.038
1
6mer
319-341
0.007
5
RP5-944M2.3
hsa-miR-125a-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539969
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1632-1655
0.040
1
7mer
402-422
0.003
Not Conserved
6mer
715-736
0.002
1
AC004158.2
hsa-miR-125a-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570152
Biotype: lincRNA
Gene id: ENSG00000261008
Gene Name: AC004158.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
303-326
0.037
1
6mer
184-207
0.004
1
6mer
312-335
0.004
1
RP11-805I24.1
hsa-miR-125a-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563931
Biotype: lincRNA
Gene id: ENSG00000261177
Gene Name: RP11-805I24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-176
0.016
2
8mer
5053-5078
0.013
0
8mer
7327-7339
0.008
1
7mer
3614-3626
0.004
1
7mer
2535-2551
0.002
0
6mer
5743-5764
0.001
4
6mer
2174-2198
0.001
Not Conserved
XLOC_013743
hsa-miR-125a-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028388
Biotype: transcript isomorph
Gene id: XLOC_013743
Gene Name: XLOC_013743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
825-830
0.015
9
7mer
221-231
0.014
3
8mer
896-920
0.010
2
6mer
136-158
0.005
2
6mer
1425-1447
0.002
1
RP11-517C16.2
hsa-miR-125a-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565700
Biotype: antisense
Gene id: ENSG00000261286
Gene Name: RP11-517C16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2940-2960
0.016
1
7mer
445-470
0.012
3
7mer
24-43
0.009
2
7mer
596-606
0.007
0
6mer
1610-1625
0.001
3
LINC01330
hsa-miR-125a-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000459923
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1377-1401
0.027
1
7mer
1064-1085
0.018
Not Conserved
RP11-153N17.1
hsa-miR-125a-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441295
Biotype: lincRNA
Gene id: ENSG00000233960
Gene Name: RP11-153N17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
660-681
0.045
1
RP5-945I17.2
hsa-miR-125a-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527684
Biotype: lincRNA
Gene id: ENSG00000254669
Gene Name: RP5-945I17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
102-119
0.045
0
TTN-AS1
hsa-miR-125a-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000614124
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-360
0.045
4
RP11-314M24.1
hsa-miR-125a-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000461528
Biotype: lincRNA
Gene id: ENSG00000240241
Gene Name: RP11-314M24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-181
0.045
2
XLOC_013012
hsa-miR-125a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026954
Biotype: transcript isomorph
Gene id: XLOC_013012
Gene Name: XLOC_013012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-243
0.033
1
6mer
920-938
0.012
1
RP11-696D21.2
hsa-miR-125a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557475
Biotype: lincRNA
Gene id: ENSG00000258943
Gene Name: RP11-696D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
825-851
0.042
4
6mer
194-216
0.002
1
RP11-48F14.1
hsa-miR-125a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000427914
Biotype: lincRNA
Gene id: ENSG00000224406
Gene Name: RP11-48F14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2051-2069
0.039
1
6mer
178-205
0.003
3
6mer
1195-1219
0.002
2
XLOC_007254
hsa-miR-125a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015544
Biotype: transcript isomorph
Gene id: XLOC_007254
Gene Name: XLOC_007254
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
13-37
0.044
1
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