LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RP11-488I20.3
hsa-miR-125a-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569242
Biotype: lincRNA
Gene id: ENSG00000259841
Gene Name: RP11-488I20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
437-452
0.047
0
XLOC_008559
hsa-miR-125a-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018783
Biotype: transcript isomorph
Gene id: XLOC_008559
Gene Name: XLOC_008559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1670-1691
0.045
4
6mer
1171-1191
0.002
1
XLOC_010128
hsa-miR-125a-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020842
Biotype: transcript isomorph
Gene id: XLOC_010128
Gene Name: XLOC_010128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1826-1839
0.045
1
6mer
828-852
0.003
0
CTB-178M22.2
hsa-miR-125a-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519795
Biotype: antisense
Gene id: ENSG00000253978
Gene Name: CTB-178M22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
42-62
0.047
0
CTD-2358C21.3
hsa-miR-125a-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563338
Biotype: lincRNA
Gene id: ENSG00000260568
Gene Name: CTD-2358C21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-192
0.047
0
CTD-2006C1.2
hsa-miR-125a-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592187
Biotype: retained_intron
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-379
0.045
1
6mer
2762-2777
0.002
0
RP1-74M1.3
hsa-miR-125a-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610135
Biotype: lincRNA
Gene id: ENSG00000272796
Gene Name: RP1-74M1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4614-4632
0.013
4
7mer
378-401
0.011
1
7mer
1156-1179
0.004
4
7mer
994-1020
0.003
Not Conserved
6mer
4013-4028
0.003
4
6mer
539-560
0.003
4
6mer
2517-2543
0.003
5
7mer
2772-2798
0.002
1
7mer
975-999
0.002
0
6mer
334-359
0.002
1
6mer
2123-2146
0.001
1
RP11-314M24.1
hsa-miR-125a-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496674
Biotype: lincRNA
Gene id: ENSG00000240241
Gene Name: RP11-314M24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-118
0.047
2
HOXA-AS2
hsa-miR-125a-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000523364
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
940-954
0.047
5
RP11-407B7.1
hsa-miR-125a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601913
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-91
0.039
0
6mer
565-589
0.007
3
LINC00843
hsa-miR-125a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429104
Biotype: lincRNA
Gene id: ENSG00000178440
Gene Name: LINC00843
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
438-465
0.046
1
RP11-38M8.1
hsa-miR-125a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609209
Biotype: lincRNA
Gene id: ENSG00000273297
Gene Name: RP11-38M8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
702-709
0.032
1
7mer
810-828
0.009
0
6mer
731-749
0.005
3
RP11-732A19.9
hsa-miR-125a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000545572
Biotype: antisense
Gene id: ENSG00000255680
Gene Name: RP11-732A19.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-60
0.046
6
CTD-2012K14.8
hsa-miR-125a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621378
Biotype: antisense
Gene id: ENSG00000276075
Gene Name: CTD-2012K14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
59-85
0.039
3
6mer
397-406
0.006
5
6mer
707-722
0.002
0
RP11-1085N6.5
hsa-miR-125a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555946
Biotype: lincRNA
Gene id: ENSG00000258776
Gene Name: RP11-1085N6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-485
0.046
2
RP11-407B7.1
hsa-miR-125a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593559
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
96-116
0.039
0
6mer
702-726
0.007
3
LL22NC03-2H8.4
hsa-miR-125a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412149
Biotype: lincRNA
Gene id: ENSG00000234630
Gene Name: LL22NC03-2H8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-197
0.023
0
6mer
254-280
0.013
0
6mer
106-126
0.011
0
XLOC_011918
hsa-miR-125a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024630
Biotype: transcript isomorph
Gene id: XLOC_011918
Gene Name: XLOC_011918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3568-3589
0.035
0
7mer
3527-3547
0.007
0
6mer
174-198
0.003
0
6mer
1466-1483
0.001
Not Conserved
RP11-469N6.3
hsa-miR-125a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529417
Biotype: lincRNA
Gene id: ENSG00000254989
Gene Name: RP11-469N6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
97-111
0.046
1
RP11-574K11.29
hsa-miR-125a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000580623
Biotype: lincRNA
Gene id: ENSG00000272140
Gene Name: RP11-574K11.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-125
0.046
1
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