LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-5p


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Gene
miRNA
Score
DIANA Links
RNASEH2B-AS1
hsa-miR-125a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000594244
Biotype: antisense
Gene id: ENSG00000233672
Gene Name: RNASEH2B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
303-319
0.049
0
RP11-932O9.4
hsa-miR-125a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567770
Biotype: lincRNA
Gene id: ENSG00000259906
Gene Name: RP11-932O9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
972-994
0.023
1
8mer
589-611
0.021
1
6mer
270-297
0.003
0
6mer
404-422
0.002
0
XLOC_012373
hsa-miR-125a-5p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00026027
Biotype: transcript isomorph
Gene id: XLOC_012373
Gene Name: XLOC_012373
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-137
0.049
6
CTC-459F4.3
hsa-miR-125a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587188
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
592-611
0.049
0
RP11-640N11.2
hsa-miR-125a-5p
0.911
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000505153
Biotype: antisense
Gene id: ENSG00000250493
Gene Name: RP11-640N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-266
0.029
5
7mer
5199-5218
0.007
0
8mer
5135-5146
0.005
0
7mer
986-1004
0.005
1
6mer
623-642
0.002
Not Conserved
6mer
5129-5141
0.001
Not Conserved
6mer
1503-1526
0.000
0
STX16-NPEPL1
hsa-miR-125a-5p
0.910
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_037945.1
Biotype: sense
Gene id: NR_037945.1 (gene)
Gene Name: STX16-NPEPL1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2940-2957
0.014
1
9mer
354-378
0.010
2
7mer
1514-1520
0.008
6
7mer
3059-3084
0.005
8
7mer
294-311
0.005
1
8mer+mismatch
451-469
0.002
3
6mer
1684-1697
0.002
1
6mer
3073-3098
0.001
7
6mer
371-394
0.001
4
6mer
1904-1929
0.001
1
6mer
1952-1976
0.000
2
XLOC_012925
hsa-miR-125a-5p
0.909
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026823
Biotype: transcript isomorph
Gene id: XLOC_012925
Gene Name: XLOC_012925
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-328
0.046
1
6mer
679-691
0.003
1
AC010096.1
hsa-miR-125a-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443897
Biotype: lincRNA
Gene id: ENSG00000234597
Gene Name: AC010096.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
520-527
0.042
1
7mer
747-758
0.004
2
6mer
813-838
0.002
1
AC007966.1
hsa-miR-125a-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110217.1
Biotype: antisense
Gene id: NR_110217.1 (gene)
Gene Name: AC007966.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-805
0.048
0
AC007966.1
hsa-miR-125a-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427269
Biotype: antisense
Gene id: ENSG00000226747
Gene Name: AC007966.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-467
0.048
0
RP11-434D2.3
hsa-miR-125a-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591705
Biotype: lincRNA
Gene id: ENSG00000267075
Gene Name: RP11-434D2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
145-162
0.020
0
8mer
4342-4368
0.011
0
7mer
4075-4096
0.006
0
6mer
437-461
0.002
0
6mer
3572-3592
0.002
0
7mer
2106-2127
0.002
0
6mer
4166-4192
0.001
0
6mer
1333-1351
0.001
0
6mer
2991-3012
0.001
0
6mer
2648-2667
0.001
0
6mer
2220-2239
0.001
0
XLOC_005559
hsa-miR-125a-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012631
Biotype: transcript isomorph
Gene id: XLOC_005559
Gene Name: XLOC_005559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
795-818
0.038
1
6mer
309-335
0.004
1
7mer
2114-2140
0.002
0
8mer
1578-1600
0.002
0
6mer
3380-3404
0.002
1
RP1-101G11.3
hsa-miR-125a-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624442
Biotype: lincRNA
Gene id: ENSG00000280356
Gene Name: RP1-101G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
715-726
0.014
1
9mer
2637-2655
0.012
Not Conserved
9mer
5836-5863
0.009
0
7mer
5580-5596
0.004
1
6mer
318-338
0.003
0
6mer
1121-1130
0.002
0
6mer
6914-6933
0.002
0
6mer
901-917
0.001
1
6mer
4447-4470
0.001
1
6mer
9509-9529
0.001
1
XLOC_004517
hsa-miR-125a-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010065
Biotype: transcript isomorph
Gene id: XLOC_004517
Gene Name: XLOC_004517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-179
0.048
1
HOXA-AS2
hsa-miR-125a-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000521687
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-40
0.045
5
6mer
257-272
0.003
1
RP11-586K12.11
hsa-miR-125a-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568972
Biotype: lincRNA
Gene id: ENSG00000261569
Gene Name: RP11-586K12.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-53
0.043
0
6mer
334-357
0.005
Not Conserved
PRMT5-AS1
hsa-miR-125a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000424245
Biotype: antisense
Gene id: ENSG00000237054
Gene Name: PRMT5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1170-1177
0.031
1
7mer
1728-1753
0.013
9
6mer
1616-1630
0.002
4
6mer
225-249
0.002
Not Conserved
AC003075.4
hsa-miR-125a-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419382
Biotype: antisense
Gene id: ENSG00000237773
Gene Name: AC003075.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-235
0.032
0
7mer
70-96
0.015
1
RP3-449M8.9
hsa-miR-125a-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602790
Biotype: lincRNA
Gene id: ENSG00000270000
Gene Name: RP3-449M8.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
193-200
0.035
1
6mer
395-414
0.007
4
6mer
155-180
0.005
1
AP000350.5
hsa-miR-125a-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609510
Biotype: lincRNA
Gene id: ENSG00000273295
Gene Name: AP000350.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-5p
Sequence: ucccugagacccuuuaaccuguga
MirBase ID: MIMAT0000443
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5214-5235
0.007
Not Conserved
7mer
4846-4852
0.007
0
8mer
1334-1355
0.006
2
7mer
1134-1156
0.006
0
7mer
5597-5619
0.005
0
6mer
5477-5503
0.005
3
8mer
3268-3289
0.003
0
7mer
2931-2941
0.002
0
6mer
4192-4196
0.001
0
6mer
4422-4434
0.001
0
6mer
1488-1512
0.001
0
6mer
4057-4080
0.001
0
6mer
2287-2304
0.001
0
6mer
3758-3783
0.001
0
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