LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
LINC00620
hsa-miR-125a-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_027103.1
Biotype: lincRNA
Gene id: NR_027103.1 (gene)
Gene Name: LINC00620
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-339
0.022
2
6mer
195-217
0.002
1
MIR7515HG
hsa-miR-125a-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591450
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-568
0.013
Not Conserved
7mer
433-459
0.012
1
XLOC_001412
hsa-miR-125a-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002863
Biotype: transcript isomorph
Gene id: XLOC_001412
Gene Name: XLOC_001412
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3919-3937
0.014
0
7mer
901-920
0.005
1
6mer
3196-3216
0.002
1
6mer
1050-1076
0.002
2
7mer
2505-2525
0.001
Not Conserved
6mer
2705-2723
0.001
1
AC068831.10
hsa-miR-125a-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557804
Biotype: antisense
Gene id: ENSG00000214432
Gene Name: AC068831.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-524
0.012
2
7mer
612-629
0.005
1
6mer
276-296
0.004
0
7mer
1125-1147
0.003
1
6mer
667-691
0.001
2
XLOC_002310
hsa-miR-125a-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004437
Biotype: transcript isomorph
Gene id: XLOC_002310
Gene Name: XLOC_002310
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
360-385
0.025
2
AC092162.1
hsa-miR-125a-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428283
Biotype: retained_intron
Gene id: ENSG00000230552
Gene Name: AC092162.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4470-4488
0.012
2
7mer
731-754
0.012
Not Conserved
6mer
2569-2594
0.001
Not Conserved
XLOC_011515
hsa-miR-125a-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024148
Biotype: transcript isomorph
Gene id: XLOC_011515
Gene Name: XLOC_011515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1473-1500
0.015
Not Conserved
7mer
329-346
0.007
0
6mer
1682-1707
0.003
1
MEG3
hsa-miR-125a-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_002766.2
Biotype: lincRNA
Gene id: NR_002766.2 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-461
0.013
1
7mer
1176-1198
0.012
3
AL035610.1
hsa-miR-125a-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000426534
Biotype: lincRNA
Gene id: ENSG00000232079
Gene Name: AL035610.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1559-1584
0.025
Not Conserved
RP11-350G8.5
hsa-miR-125a-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424435
Biotype: antisense
Gene id: ENSG00000228013
Gene Name: RP11-350G8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-98
0.015
0
7mer
888-912
0.006
1
7mer
1130-1149
0.004
1
LINC00620
hsa-miR-125a-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000419618
Biotype: antisense
Gene id: ENSG00000224514
Gene Name: LINC00620
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-339
0.022
2
6mer
195-217
0.002
1
RP11-480I12.7
hsa-miR-125a-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456105
Biotype: lincRNA
Gene id: ENSG00000234996
Gene Name: RP11-480I12.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2146-2163
0.018
1
6mer
1163-1176
0.003
5
6mer
886-906
0.002
2
6mer
242-268
0.002
0
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