LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
LINC01422
hsa-miR-125a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000434868
Biotype: lincRNA
Gene id: ENSG00000223704
Gene Name: LINC01422
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-60
0.020
0
6mer
5317-5337
0.002
0
6mer
1426-1448
0.001
1
6mer
4378-4394
0.001
3
6mer
2362-2388
0.001
0
6mer
1468-1489
0.000
0
CTD-3162L10.1
hsa-miR-125a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586340
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1407-1431
0.017
1
6mer
2033-2056
0.005
1
6mer
1920-1946
0.003
0
CTD-3162L10.1
hsa-miR-125a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600983
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1407-1431
0.017
1
6mer
2033-2056
0.005
1
6mer
1920-1946
0.003
0
RP11-1096D5.1
hsa-miR-125a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000567801
Biotype: lincRNA
Gene id: ENSG00000260440
Gene Name: RP11-1096D5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5114-5133
0.018
1
7mer
776-790
0.003
0
6mer
388-408
0.002
1
6mer
3082-3101
0.001
0
6mer
3807-3827
0.001
0
RP11-299J3.8
hsa-miR-125a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608346
Biotype: antisense
Gene id: ENSG00000272758
Gene Name: RP11-299J3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
240-260
0.015
0
7mer
98-125
0.010
1
LINC01193
hsa-miR-125a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000553416
Biotype: lincRNA
Gene id: ENSG00000258710
Gene Name: LINC01193
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
681-701
0.015
1
7mer
2309-2334
0.010
0
LOC645513
hsa-miR-125a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037630.1
Biotype: antisense
Gene id: NR_037630.1 (gene)
Gene Name: LOC645513
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
988-1004
0.020
1
7mer
228-253
0.002
0
8mer
323-343
0.002
1
RP4-734G22.3
hsa-miR-125a-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606802
Biotype: antisense
Gene id: ENSG00000272078
Gene Name: RP4-734G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6946-6968
0.016
10
8mer
2854-2874
0.004
7
8mer
4506-4532
0.002
6
7mer
5695-5711
0.001
2
6mer
5536-5561
0.001
2
6mer
1104-1120
0.001
0
XLOC_013167
hsa-miR-125a-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026799
Biotype: transcript isomorph
Gene id: XLOC_013167
Gene Name: XLOC_013167
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2510-2531
0.022
1
6mer
674-696
0.003
1
RP11-65L3.2
hsa-miR-125a-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603415
Biotype: antisense
Gene id: ENSG00000270277
Gene Name: RP11-65L3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-79
0.025
5
AC093901.1
hsa-miR-125a-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449819
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-253
0.025
10
RP11-238K6.1
hsa-miR-125a-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518973
Biotype: lincRNA
Gene id: ENSG00000253288
Gene Name: RP11-238K6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
743-760
0.012
0
7mer
382-401
0.006
Not Conserved
6mer
4048-4058
0.004
0
6mer
2235-2254
0.002
0
PVT1
hsa-miR-125a-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000513868
Biotype: lincRNA
Gene id: ENSG00000249859
Gene Name: PVT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1544-1561
0.011
1
7mer
985-999
0.008
1
6mer
1445-1459
0.003
1
6mer
837-856
0.002
1
CTC-523E23.1
hsa-miR-125a-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000561778
Biotype: lincRNA
Gene id: ENSG00000261754
Gene Name: CTC-523E23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1933-1952
0.011
0
6mer
2460-2484
0.005
1
6mer
1638-1656
0.005
2
7mer
1863-1885
0.004
1
XLOC_003798
hsa-miR-125a-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008352
Biotype: transcript isomorph
Gene id: XLOC_003798
Gene Name: XLOC_003798
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
364-378
0.017
1
7mer
141-166
0.007
0
RP11-563P16.1
hsa-miR-125a-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533459
Biotype: lincRNA
Gene id: ENSG00000254987
Gene Name: RP11-563P16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
465-491
0.025
1
FAM66C
hsa-miR-125a-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000438689
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
110-128
0.014
0
6mer
126-146
0.011
0
RP11-733O18.1
hsa-miR-125a-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000422914
Biotype: lincRNA
Gene id: ENSG00000236120
Gene Name: RP11-733O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-342
0.019
0
6mer
513-539
0.005
1
LINC00299
hsa-miR-125a-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430192
Biotype: lincRNA
Gene id: ENSG00000236790
Gene Name: LINC00299
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
579-598
0.011
1
7mer
1659-1680
0.006
1
7mer
279-300
0.005
1
6mer
1093-1115
0.002
1
6mer
1066-1080
0.001
Not Conserved
DDX11-AS1
hsa-miR-125a-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500527
Biotype: antisense
Gene id: ENSG00000245614
Gene Name: DDX11-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1542-1558
0.014
0
6mer
1772-1798
0.005
2
6mer
396-416
0.004
1
6mer
1697-1716
0.002
1
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