LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
TMEM51-AS1
hsa-miR-125a-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000310916
Biotype: antisense
Gene id: ENSG00000175147
Gene Name: TMEM51-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6026-6049
0.004
3
6mer
6337-6359
0.004
4
6mer
7027-7047
0.004
Not Conserved
8mer
5192-5208
0.003
0
7mer
4425-4446
0.002
2
6mer
147-166
0.002
0
7mer
4616-4635
0.001
2
6mer
6278-6294
0.001
1
6mer
4811-4827
0.001
3
6mer
4664-4682
0.001
1
6mer
2887-2911
0.001
1
RP11-753A21.1
hsa-miR-125a-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561121
Biotype: lincRNA
Gene id: ENSG00000259478
Gene Name: RP11-753A21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1400-1419
0.014
1
7mer
1010-1036
0.010
1
6mer
673-689
0.002
0
MIR3663HG
hsa-miR-125a-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000419373
Biotype: lincRNA
Gene id: ENSG00000234474
Gene Name: MIR3663HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-261
0.025
4
LOC100129518
hsa-miR-125a-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_037166.1
Biotype: sense
Gene id: NR_037166.1 (gene)
Gene Name: LOC100129518
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
400-424
0.012
1
7mer
289-308
0.007
1
8mer+mismatch
1528-1548
0.004
5
6mer
951-966
0.002
1
LINC00667
hsa-miR-125a-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582363
Biotype: lincRNA
Gene id: ENSG00000263753
Gene Name: LINC00667
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1463-1486
0.006
4
6mer
2791-2809
0.004
1
8mer
1133-1158
0.004
2
7mer
2654-2674
0.004
0
6mer
632-645
0.004
1
6mer
171-195
0.002
1
6mer
1116-1142
0.001
1
LINC00887
hsa-miR-125a-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_024480.1
Biotype: lincRNA
Gene id: NR_024480.1 (gene)
Gene Name: LINC00887
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2616-2641
0.022
0
6mer
2633-2657
0.002
0
6mer
1445-1463
0.001
1
XLOC_011936
hsa-miR-125a-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024643
Biotype: transcript isomorph
Gene id: XLOC_011936
Gene Name: XLOC_011936
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-79
0.025
3
CYB561D2
hsa-miR-125a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607088
Biotype: antisense
Gene id: ENSG00000271858
Gene Name: CYB561D2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-46
0.022
6
6mer
346-371
0.003
3
C10orf71-AS1
hsa-miR-125a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000437677
Biotype: antisense
Gene id: ENSG00000236208
Gene Name: C10orf71-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Breast Normal/Primary
- Heart Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-49
0.025
0
RP11-227D2.3
hsa-miR-125a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000552439
Biotype: antisense
Gene id: ENSG00000225280
Gene Name: RP11-227D2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-142
0.025
2
RP11-337C18.8
hsa-miR-125a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607149
Biotype: antisense
Gene id: ENSG00000237188
Gene Name: RP11-337C18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
593-613
0.022
2
6mer
1281-1294
0.003
4
RP4-728D4.2
hsa-miR-125a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444348
Biotype: antisense
Gene id: ENSG00000239636
Gene Name: RP4-728D4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-173
0.025
9
RP11-344B5.4
hsa-miR-125a-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427080
Biotype: lincRNA
Gene id: ENSG00000235007
Gene Name: RP11-344B5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-94
0.014
0
8mer+wobble
174-195
0.006
1
6mer
825-850
0.006
1
RP4-539M6.14
hsa-miR-125a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610737
Biotype: antisense
Gene id: ENSG00000181123
Gene Name: RP4-539M6.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
456-475
0.007
12
8mer
638-658
0.006
3
6mer
587-604
0.006
10
6mer
970-995
0.005
1
AC083864.4
hsa-miR-125a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000381493
Biotype: lincRNA
Gene id: ENSG00000205745
Gene Name: AC083864.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1426-1447
0.025
3
LINC00277
hsa-miR-125a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559964
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-124
0.025
2
LINC01116
hsa-miR-125a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000339037
Biotype: lincRNA
Gene id: ENSG00000163364
Gene Name: LINC01116
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-401
0.025
4
XLOC_011723
hsa-miR-125a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024409
Biotype: transcript isomorph
Gene id: XLOC_011723
Gene Name: XLOC_011723
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-63
0.018
1
6mer
1346-1358
0.007
4
AC023115.2
hsa-miR-125a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450294
Biotype: lincRNA
Gene id: ENSG00000235885
Gene Name: AC023115.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-522
0.013
1
6mer
691-712
0.007
4
6mer
443-467
0.004
1
TP73-AS1
hsa-miR-125a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423764
Biotype: antisense
Gene id: ENSG00000227372
Gene Name: TP73-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
311-333
0.013
0
6mer
2214-2240
0.004
1
7mer
2108-2130
0.003
2
6mer
483-497
0.003
1
6mer
1860-1881
0.002
0
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