LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
RP11-90E5.1
hsa-miR-125a-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560128
Biotype: antisense
Gene id: ENSG00000259356
Gene Name: RP11-90E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1178-1196
0.011
0
7mer
145-157
0.009
2
7mer
1497-1524
0.006
0
CTD-2553C6.1
hsa-miR-125a-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592332
Biotype: antisense
Gene id: ENSG00000267650
Gene Name: CTD-2553C6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-438
0.015
6
9mer
55-72
0.010
5
LDLRAD4-AS1
hsa-miR-125a-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_040031.1
Biotype: antisense
Gene id: NR_040031.1 (gene)
Gene Name: LDLRAD4-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2112-2138
0.017
3
8mer
1969-1993
0.009
0
XLOC_001641
hsa-miR-125a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003834
Biotype: transcript isomorph
Gene id: XLOC_001641
Gene Name: XLOC_001641
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
364-389
0.007
1
6mer
1799-1811
0.005
2
6mer
2128-2144
0.004
1
6mer
296-316
0.004
4
6mer
1639-1656
0.003
1
6mer
323-343
0.002
1
AC093323.3
hsa-miR-125a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000307533
Biotype: lincRNA
Gene id: ENSG00000170846
Gene Name: AC093323.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1259-1284
0.016
1
6mer
1907-1933
0.009
3
MIR210HG
hsa-miR-125a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500447
Biotype: lincRNA
Gene id: ENSG00000247095
Gene Name: MIR210HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1295-1318
0.013
1
7mer
1116-1139
0.004
1
6mer
1742-1762
0.003
1
6mer
1871-1897
0.003
0
6mer
1707-1725
0.002
1
6mer
674-690
0.002
1
XLOC_010876
hsa-miR-125a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022555
Biotype: transcript isomorph
Gene id: XLOC_010876
Gene Name: XLOC_010876
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-210
0.026
2
RP11-379K17.4
hsa-miR-125a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469301
Biotype: antisense
Gene id: ENSG00000239219
Gene Name: RP11-379K17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1525-1549
0.026
5
RP11-20B24.5
hsa-miR-125a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592890
Biotype: antisense
Gene id: ENSG00000265845
Gene Name: RP11-20B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-162
0.026
3
XLOC_004640
hsa-miR-125a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010177
Biotype: transcript isomorph
Gene id: XLOC_004640
Gene Name: XLOC_004640
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-30
0.021
1
6mer
3024-3043
0.002
1
6mer
1719-1742
0.001
1
6mer
2622-2640
0.001
0
6mer
1773-1791
0.000
1
RP11-164H13.1
hsa-miR-125a-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556386
Biotype: antisense
Gene id: ENSG00000257275
Gene Name: RP11-164H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
666-689
0.013
4
7mer
1723-1745
0.005
1
7mer
350-369
0.005
0
6mer
906-925
0.002
1
LINC00887
hsa-miR-125a-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000414120
Biotype: lincRNA
Gene id: ENSG00000214145
Gene Name: LINC00887
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2486-2511
0.022
0
6mer
2503-2527
0.002
0
6mer
1445-1463
0.001
1
SNHG14
hsa-miR-125a-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8556-8578
0.014
0
7mer
8735-8756
0.007
0
6mer
631-654
0.002
1
6mer
4609-4629
0.002
1
6mer
4740-4761
0.000
0
LOC100506985
hsa-miR-125a-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_109781.1
Biotype: antisense
Gene id: NR_109781.1 (gene)
Gene Name: LOC100506985
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-554
0.023
2
6mer
685-701
0.003
2
AC003102.3
hsa-miR-125a-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586388
Biotype: antisense
Gene id: ENSG00000267750
Gene Name: AC003102.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1900-1922
0.012
Not Conserved
7mer
1243-1267
0.004
0
6mer
358-376
0.004
0
6mer
72-90
0.003
0
6mer
1420-1438
0.003
0
LINC00887
hsa-miR-125a-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000397644
Biotype: lincRNA
Gene id: ENSG00000214145
Gene Name: LINC00887
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-243
0.023
0
6mer
235-259
0.002
0
XLOC_003323
hsa-miR-125a-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005403
Biotype: transcript isomorph
Gene id: XLOC_003323
Gene Name: XLOC_003323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1524-1548
0.025
5
XLOC_012692
hsa-miR-125a-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026215
Biotype: transcript isomorph
Gene id: XLOC_012692
Gene Name: XLOC_012692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
647-665
0.006
4
7mer
1137-1154
0.005
0
7mer
2733-2747
0.005
1
6mer
2046-2065
0.003
1
7mer
2103-2122
0.003
0
7mer
1313-1332
0.002
0
6mer
1261-1284
0.001
0
LINC01257
hsa-miR-125a-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000376678
Biotype: lincRNA
Gene id: ENSG00000204603
Gene Name: LINC01257
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-105
0.011
1
7mer
387-410
0.006
1
6mer
1746-1768
0.002
1
6mer
1795-1820
0.002
1
6mer
1139-1161
0.002
0
6mer
1496-1514
0.001
Not Conserved
RP4-555D20.2
hsa-miR-125a-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568686
Biotype: lincRNA
Gene id: ENSG00000261786
Gene Name: RP4-555D20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
901-915
0.015
2
7mer
1268-1295
0.006
1
6mer
206-224
0.003
2
6mer
2206-2222
0.001
1
6mer
2293-2308
0.001
1
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