LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125a-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP1-151B14.6
hsa-miR-125a-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000419128
Biotype: antisense
Gene id: ENSG00000235237
Gene Name: RP1-151B14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-518
0.026
8
AC092660.1
hsa-miR-125a-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420648
Biotype: lincRNA
Gene id: ENSG00000234877
Gene Name: AC092660.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-163
0.026
5
RP11-717D12.1
hsa-miR-125a-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000398957
Biotype: sense_intronic
Gene id: ENSG00000214773
Gene Name: RP11-717D12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
683-696
0.017
0
7mer
855-875
0.009
3
RP11-755B10.3
hsa-miR-125a-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465933
Biotype: lincRNA
Gene id: ENSG00000241933
Gene Name: RP11-755B10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
241-259
0.012
0
7mer
2389-2413
0.006
1
7mer
2488-2507
0.005
0
7mer
1343-1367
0.003
0
PTPRD-AS1
hsa-miR-125a-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430766
Biotype: lincRNA
Gene id: ENSG00000225706
Gene Name: PTPRD-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1515-1539
0.026
Not Conserved
CH17-140K24.2
hsa-miR-125a-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000623336
Biotype: antisense
Gene id: ENSG00000280029
Gene Name: CH17-140K24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-108
0.020
3
6mer
24-49
0.006
0
RP11-553E24.2
hsa-miR-125a-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567981
Biotype: lincRNA
Gene id: ENSG00000260477
Gene Name: RP11-553E24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
270-290
0.026
6
XLOC_012017
hsa-miR-125a-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024736
Biotype: transcript isomorph
Gene id: XLOC_012017
Gene Name: XLOC_012017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-333
0.023
11
7mer
2587-2601
0.003
0
LINC01000
hsa-miR-125a-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4915-4935
0.005
1
7mer
5999-6017
0.003
0
7mer
5562-5576
0.003
1
7mer
7285-7307
0.003
0
8mer
4509-4530
0.002
0
7mer
8847-8870
0.002
0
7mer
6958-6973
0.002
0
6mer
8502-8520
0.001
0
6mer
5208-5229
0.001
1
6mer
7804-7818
0.001
0
6mer
5477-5501
0.001
1
6mer
2055-2074
0.000
Not Conserved
RAMP2-AS1
hsa-miR-125a-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587694
Biotype: lincRNA
Gene id: ENSG00000197291
Gene Name: RAMP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-224
0.006
0
7mer
312-336
0.006
1
7mer
353-377
0.006
0
6mer
1377-1399
0.004
4
6mer
978-990
0.003
4
6mer
1551-1573
0.002
1
RP11-983P16.4
hsa-miR-125a-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546793
Biotype: antisense
Gene id: ENSG00000257337
Gene Name: RP11-983P16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2580-2602
0.017
7
6mer
2452-2472
0.005
4
6mer
811-836
0.002
1
6mer
146-164
0.002
1
CTD-2619J13.8
hsa-miR-125a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600123
Biotype: processed_transcript
Gene id: ENSG00000268230
Gene Name: CTD-2619J13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1432-1447
0.009
1
7mer
860-883
0.009
3
8mer
963-984
0.003
1
7mer
1614-1633
0.002
0
6mer
822-841
0.002
5
6mer
1499-1512
0.002
Not Conserved
XLOC_006466
hsa-miR-125a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013179
Biotype: transcript isomorph
Gene id: XLOC_006466
Gene Name: XLOC_006466
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-232
0.014
0
8mer
975-996
0.008
Not Conserved
7mer
1110-1129
0.004
Not Conserved
RP11-610P16.1
hsa-miR-125a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508847
Biotype: lincRNA
Gene id: ENSG00000251611
Gene Name: RP11-610P16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-93
0.026
3
XLOC_013368
hsa-miR-125a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027384
Biotype: transcript isomorph
Gene id: XLOC_013368
Gene Name: XLOC_013368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
259-286
0.007
7
7mer
57-74
0.007
1
6mer
279-300
0.004
6
7mer
1147-1166
0.003
0
6mer
179-199
0.002
1
6mer
2840-2859
0.002
0
CTD-2201E18.3
hsa-miR-125a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000314957
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
442-464
0.019
1
6mer
1397-1419
0.007
1
LINC01093
hsa-miR-125a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506479
Biotype: lincRNA
Gene id: ENSG00000249173
Gene Name: LINC01093
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
581-593
0.018
Not Conserved
6mer
49-68
0.006
3
6mer
331-346
0.002
1
HCG25
hsa-miR-125a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422366
Biotype: antisense
Gene id: ENSG00000232940
Gene Name: HCG25
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-282
0.026
7
AC012445.1
hsa-miR-125a-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000442831
Biotype: lincRNA
Gene id: ENSG00000229550
Gene Name: AC012445.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-422
0.026
0
XLOC_001676
hsa-miR-125a-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004889
Biotype: transcript isomorph
Gene id: XLOC_001676
Gene Name: XLOC_001676
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-392
0.021
0
7mer
69-92
0.005
Not Conserved
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept