LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_008652
hsa-miR-125a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017720
Biotype: transcript isomorph
Gene id: XLOC_008652
Gene Name: XLOC_008652
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3350-3367
0.010
1
6mer
12-36
0.004
2
7mer
2105-2127
0.003
5
6mer
1536-1560
0.003
10
8mer
2114-2138
0.002
2
7mer
2218-2243
0.002
4
6mer
3022-3045
0.002
1
6mer
1686-1707
0.001
0
RP3-416J7.5
hsa-miR-125a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000381078
Biotype: lincRNA
Gene id: ENSG00000205653
Gene Name: RP3-416J7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
703-728
0.020
0
7mer
1608-1624
0.007
1
RP11-804L24.2
hsa-miR-125a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555913
Biotype: lincRNA
Gene id: ENSG00000259077
Gene Name: RP11-804L24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
167-194
0.014
1
7mer
213-228
0.009
0
6mer
104-124
0.003
1
CTD-3128G10.7
hsa-miR-125a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614781
Biotype: sense_intronic
Gene id: ENSG00000276980
Gene Name: CTD-3128G10.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
285-302
0.022
1
6mer
829-855
0.004
1
XLOC_005085
hsa-miR-125a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010558
Biotype: transcript isomorph
Gene id: XLOC_005085
Gene Name: XLOC_005085
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3756-3778
0.019
6
6mer
1035-1053
0.005
8
6mer
2280-2298
0.001
1
8mer+mismatch
274-294
0.001
1
CEBPZ-AS1
hsa-miR-125a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037879.1
Biotype: sense
Gene id: NR_037879.1 (gene)
Gene Name: CEBPZ-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3242-3269
0.022
0
6mer
46-68
0.005
1
LINC00277
hsa-miR-125a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558147
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-214
0.022
2
6mer
43-65
0.004
1
RP11-20B24.5
hsa-miR-125a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582631
Biotype: antisense
Gene id: ENSG00000265845
Gene Name: RP11-20B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-292
0.026
3
RP11-222A5.1
hsa-miR-125a-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457217
Biotype: lincRNA
Gene id: ENSG00000224718
Gene Name: RP11-222A5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1379-1402
0.013
0
7mer
580-605
0.013
1
RP11-849H4.4
hsa-miR-125a-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000502284
Biotype: antisense
Gene id: ENSG00000251143
Gene Name: RP11-849H4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3955-3979
0.011
1
8mer
414-435
0.009
4
6mer
1535-1558
0.003
9
6mer
1318-1339
0.002
1
6mer
1694-1717
0.001
7
RP11-424M22.3
hsa-miR-125a-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541892
Biotype: antisense
Gene id: ENSG00000256564
Gene Name: RP11-424M22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
549-575
0.018
10
6mer
172-190
0.008
7
XLOC_013734
hsa-miR-125a-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028377
Biotype: transcript isomorph
Gene id: XLOC_013734
Gene Name: XLOC_013734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-283
0.026
0
XLOC_007224
hsa-miR-125a-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015177
Biotype: transcript isomorph
Gene id: XLOC_007224
Gene Name: XLOC_007224
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24-48
0.010
7
7mer
49-71
0.007
1
6mer
162-183
0.005
1
6mer
113-139
0.004
1
RP11-69H14.6
hsa-miR-125a-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564932
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-196
0.026
1
XLOC_011161
hsa-miR-125a-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023212
Biotype: transcript isomorph
Gene id: XLOC_011161
Gene Name: XLOC_011161
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-196
0.026
1
GS1-124K5.4
hsa-miR-125a-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452565
Biotype: lincRNA
Gene id: ENSG00000237310
Gene Name: GS1-124K5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-228
0.015
1
6mer
241-252
0.011
1
RP11-474D1.3
hsa-miR-125a-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000291374
Biotype: lincRNA
Gene id: ENSG00000214039
Gene Name: RP11-474D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-235
0.012
0
7mer
706-720
0.006
0
6mer
3431-3451
0.003
1
6mer
2899-2913
0.002
0
6mer
978-998
0.002
0
6mer
1971-1992
0.001
1
SEMA3F-AS1
hsa-miR-125a-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437204
Biotype: antisense
Gene id: ENSG00000235016
Gene Name: SEMA3F-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
341-358
0.018
3
7mer
2312-2335
0.005
0
6mer
643-658
0.002
2
6mer
466-478
0.001
0
XLOC_010470
hsa-miR-125a-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021871
Biotype: transcript isomorph
Gene id: XLOC_010470
Gene Name: XLOC_010470
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1693-1714
0.026
3
RP11-211G3.3
hsa-miR-125a-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000449623
Biotype: antisense
Gene id: ENSG00000228804
Gene Name: RP11-211G3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-357
0.020
8
6mer
547-569
0.006
3
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