LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
LINC01102
hsa-miR-125a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447380
Biotype: lincRNA
Gene id: ENSG00000235597
Gene Name: LINC01102
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1232-1251
0.026
0
RP11-533O20.2
hsa-miR-125a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412701
Biotype: lincRNA
Gene id: ENSG00000223946
Gene Name: RP11-533O20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-63
0.015
3
7mer
102-120
0.011
1
AC092155.4
hsa-miR-125a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416111
Biotype: antisense
Gene id: ENSG00000226622
Gene Name: AC092155.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
550-569
0.015
2
7mer
450-469
0.011
1
RP11-253E3.3
hsa-miR-125a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000513358
Biotype: lincRNA
Gene id: ENSG00000250899
Gene Name: RP11-253E3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3339-3364
0.008
Not Conserved
7mer
3359-3385
0.008
1
7mer
3267-3291
0.007
0
6mer
2957-2974
0.002
1
8mer+wobble
1545-1559
0.001
1
XX-FW81066F1.2
hsa-miR-125a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000457775
Biotype: antisense
Gene id: ENSG00000224871
Gene Name: XX-FW81066F1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-79
0.026
1
RP11-715J22.6
hsa-miR-125a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561847
Biotype: sense_intronic
Gene id: ENSG00000260293
Gene Name: RP11-715J22.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-298
0.010
0
7mer
2766-2788
0.003
0
6mer
315-333
0.003
5
7mer
4933-4952
0.003
3
6mer
4547-4570
0.003
2
6mer
1437-1452
0.001
0
6mer
4177-4198
0.001
1
6mer
4583-4600
0.001
1
6mer
3002-3020
0.001
0
6mer
1613-1635
0.001
1
CTB-160O22.1
hsa-miR-125a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000517511
Biotype: sense_intronic
Gene id: ENSG00000253297
Gene Name: CTB-160O22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1533-1557
0.023
2
6mer
1012-1025
0.004
2
NALCN-AS1
hsa-miR-125a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000457843
Biotype: antisense
Gene id: ENSG00000233009
Gene Name: NALCN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2131-2149
0.022
1
8mer
2149-2165
0.005
1
RP11-550I24.2
hsa-miR-125a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000487238
Biotype: antisense
Gene id: ENSG00000243176
Gene Name: RP11-550I24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-375
0.021
8
6mer
99-122
0.005
1
CTD-2525I3.3
hsa-miR-125a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599125
Biotype: antisense
Gene id: ENSG00000268015
Gene Name: CTD-2525I3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-270
0.026
1
RP11-677M14.7
hsa-miR-125a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529392
Biotype: antisense
Gene id: ENSG00000245498
Gene Name: RP11-677M14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1808-1833
0.016
1
7mer
2680-2699
0.008
1
6mer
2085-2109
0.003
1
WT1-AS
hsa-miR-125a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_023920.1
Biotype: lincRNA
Gene id: NR_023920.1 (gene)
Gene Name: WT1-AS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2312-2335
0.026
9
AGBL1-AS1
hsa-miR-125a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000564487
Biotype: antisense
Gene id: ENSG00000260125
Gene Name: AGBL1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
915-938
0.022
7
8mer+wobble
1137-1157
0.004
4
N4BP2L2-IT2
hsa-miR-125a-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_026928.1
Biotype: sense
Gene id: NR_026928.1 (gene)
Gene Name: N4BP2L2-IT2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3061-3083
0.007
2
8mer
3948-3969
0.006
1
7mer
2020-2044
0.006
0
6mer
4082-4105
0.003
1
6mer
2739-2765
0.003
3
6mer
2582-2604
0.001
1
HNF1A-AS1
hsa-miR-125a-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000433033
Biotype: antisense
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-125
0.026
0
MDC1-AS1
hsa-miR-125a-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442150
Biotype: antisense
Gene id: ENSG00000224328
Gene Name: MDC1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-39
0.022
6
6mer
109-133
0.004
3
XLOC_004209
hsa-miR-125a-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008695
Biotype: transcript isomorph
Gene id: XLOC_004209
Gene Name: XLOC_004209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2641-2653
0.012
Not Conserved
6mer
3180-3205
0.007
1
7mer
1770-1791
0.003
1
6mer
1043-1062
0.003
3
6mer
1338-1353
0.001
1
6mer
2467-2484
0.001
Not Conserved
CTC-459F4.1
hsa-miR-125a-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562493
Biotype: lincRNA
Gene id: ENSG00000261770
Gene Name: CTC-459F4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3521-3544
0.004
0
6mer
3276-3288
0.004
0
6mer
2684-2693
0.003
0
6mer
918-938
0.002
0
6mer
1162-1179
0.002
0
6mer
2336-2358
0.002
0
6mer
2580-2606
0.002
0
6mer
2859-2884
0.002
0
6mer
744-762
0.001
Not Conserved
6mer
2996-3019
0.001
Not Conserved
6mer
1092-1118
0.001
0
6mer
1377-1400
0.001
0
6mer
2616-2638
0.001
0
XLOC_013363
hsa-miR-125a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026818
Biotype: transcript isomorph
Gene id: XLOC_013363
Gene Name: XLOC_013363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1941-1963
0.009
0
6mer
2967-2983
0.006
1
6mer
525-545
0.004
0
6mer
773-795
0.003
0
6mer
2828-2844
0.002
0
6mer
2280-2292
0.002
0
AC007277.3
hsa-miR-125a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428156
Biotype: antisense
Gene id: ENSG00000213981
Gene Name: AC007277.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-590
0.026
1
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