LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
LINC00483
hsa-miR-125a-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000300458
Biotype: retained_intron
Gene id: ENSG00000167117
Gene Name: LINC00483
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-131
0.011
0
7mer
254-278
0.007
1
7mer
155-178
0.004
Not Conserved
7mer
1252-1265
0.003
1
6mer
958-977
0.002
0
XLOC_001602
hsa-miR-125a-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002650
Biotype: transcript isomorph
Gene id: XLOC_001602
Gene Name: XLOC_001602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1688-1707
0.027
0
AC093323.3
hsa-miR-125a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000444232
Biotype: lincRNA
Gene id: ENSG00000170846
Gene Name: AC093323.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1190-1215
0.017
1
6mer
1838-1864
0.010
3
XLOC_009383
hsa-miR-125a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019585
Biotype: transcript isomorph
Gene id: XLOC_009383
Gene Name: XLOC_009383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-111
0.020
1
6mer
342-358
0.004
0
6mer
25-51
0.003
0
XLOC_010920
hsa-miR-125a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022618
Biotype: transcript isomorph
Gene id: XLOC_010920
Gene Name: XLOC_010920
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
492-513
0.008
1
7mer
2632-2654
0.007
1
8mer+wobble
345-365
0.006
1
6mer
2194-2207
0.003
0
6mer
2503-2528
0.003
0
RP11-44F21.3
hsa-miR-125a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507517
Biotype: antisense
Gene id: ENSG00000249717
Gene Name: RP11-44F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-114
0.011
0
7mer
246-268
0.010
1
6mer
208-224
0.003
1
6mer
548-571
0.002
0
RP11-130C19.3
hsa-miR-125a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421645
Biotype: antisense
Gene id: ENSG00000227914
Gene Name: RP11-130C19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
725-749
0.012
1
7mer
836-853
0.010
1
8mer+mismatch
188-204
0.004
1
XLOC_009303
hsa-miR-125a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019502
Biotype: transcript isomorph
Gene id: XLOC_009303
Gene Name: XLOC_009303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-82
0.025
2
6mer
18-41
0.002
0
RP4-800J21.3
hsa-miR-125a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000417346
Biotype: antisense
Gene id: ENSG00000218018
Gene Name: RP4-800J21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1130-1150
0.019
13
7mer
513-529
0.008
1
SMC5-AS1
hsa-miR-125a-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000594708
Biotype: antisense
Gene id: ENSG00000268364
Gene Name: SMC5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-379
0.022
0
6mer
302-322
0.004
0
6mer
1596-1615
0.001
0
RP11-167N24.6
hsa-miR-125a-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549961
Biotype: lincRNA
Gene id: ENSG00000258247
Gene Name: RP11-167N24.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-89
0.027
5
MIR7515HG
hsa-miR-125a-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591060
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-142
0.014
1
8mer
229-251
0.012
Not Conserved
RP4-671O14.6
hsa-miR-125a-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3666-3691
0.005
1
6mer
404-427
0.004
1
6mer
12129-12147
0.004
7
6mer
14190-14211
0.003
0
7mer
11026-11050
0.002
Not Conserved
7mer
5150-5176
0.002
1
6mer
13064-13088
0.002
1
7mer
2869-2891
0.001
1
7mer
11067-11091
0.001
1
6mer
1677-1702
0.001
1
6mer
11316-11336
0.001
0
6mer
2142-2167
0.001
Not Conserved
RP11-1069G10.2
hsa-miR-125a-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557900
Biotype: lincRNA
Gene id: ENSG00000259727
Gene Name: RP11-1069G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
998-1018
0.027
6
AC003665.1
hsa-miR-125a-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585280
Biotype: antisense
Gene id: ENSG00000234494
Gene Name: AC003665.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-256
0.027
0
XLOC_001935
hsa-miR-125a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005057
Biotype: transcript isomorph
Gene id: XLOC_001935
Gene Name: XLOC_001935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
446-470
0.015
0
6mer
568-584
0.012
0
RP11-180K7.1
hsa-miR-125a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000519700
Biotype: retained_intron
Gene id: ENSG00000242770
Gene Name: RP11-180K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-256
0.026
2
FAM157A
hsa-miR-125a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437428
Biotype: lincRNA
Gene id: ENSG00000236438
Gene Name: FAM157A
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
310-334
0.013
0
6mer
476-502
0.009
0
6mer
552-569
0.005
0
LOC100129316
hsa-miR-125a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_033912.1
Biotype: lincRNA
Gene id: NR_033912.1 (gene)
Gene Name: LOC100129316
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4827-4840
0.017
2
8mer
1439-1464
0.006
1
7mer
4137-4159
0.002
1
6mer
4008-4032
0.001
1
RP11-455F5.6
hsa-miR-125a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000610691
Biotype: antisense
Gene id: ENSG00000275371
Gene Name: RP11-455F5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
801-822
0.008
0
7mer
893-916
0.008
0
6mer
474-496
0.006
8
6mer
202-227
0.004
2
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