LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_003235
hsa-miR-125a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006634
Biotype: transcript isomorph
Gene id: XLOC_003235
Gene Name: XLOC_003235
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-337
0.006
0
7mer
5991-6001
0.005
0
6mer
566-584
0.003
3
7mer
3645-3662
0.003
1
7mer
3601-3617
0.002
1
6mer
236-257
0.002
1
6mer
1211-1233
0.001
1
6mer
4386-4409
0.001
1
6mer
2509-2528
0.001
1
6mer
4164-4179
0.001
0
6mer
2986-3010
0.001
Not Conserved
6mer
3213-3225
0.001
1
XLOC_000771
hsa-miR-125a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001448
Biotype: transcript isomorph
Gene id: XLOC_000771
Gene Name: XLOC_000771
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
437-453
0.027
0
XLOC_010012
hsa-miR-125a-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020713
Biotype: transcript isomorph
Gene id: XLOC_010012
Gene Name: XLOC_010012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
34-61
0.016
1
6mer
192-213
0.011
1
XLOC_007676
hsa-miR-125a-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016298
Biotype: transcript isomorph
Gene id: XLOC_007676
Gene Name: XLOC_007676
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
365-381
0.027
2
PRR26
hsa-miR-125a-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027151.1
Biotype: sense
Gene id: NR_027151.1 (gene)
Gene Name: PRR26
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1715-1740
0.011
1
8mer
478-491
0.008
0
7mer
1770-1790
0.003
0
6mer
1121-1138
0.003
0
6mer
415-436
0.001
0
CTB-26E19.1
hsa-miR-125a-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501834
Biotype: sense_intronic
Gene id: ENSG00000245688
Gene Name: CTB-26E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
446-466
0.027
3
XLOC_003665
hsa-miR-125a-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008209
Biotype: transcript isomorph
Gene id: XLOC_003665
Gene Name: XLOC_003665
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
407-433
0.027
1
RP11-1143G9.5
hsa-miR-125a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613291
Biotype: lincRNA
Gene id: ENSG00000274979
Gene Name: RP11-1143G9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4909-4930
0.014
1
7mer
2296-2321
0.007
1
6mer
375-379
0.005
0
RP11-705C15.4
hsa-miR-125a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546259
Biotype: antisense
Gene id: ENSG00000256442
Gene Name: RP11-705C15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
40-67
0.016
1
6mer
198-219
0.011
1
RP11-576I22.2
hsa-miR-125a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446102
Biotype: antisense
Gene id: ENSG00000231407
Gene Name: RP11-576I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
501-524
0.027
3
LINC00710
hsa-miR-125a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000617890
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
102-122
0.027
10
RP11-205M3.3
hsa-miR-125a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508313
Biotype: lincRNA
Gene id: ENSG00000248319
Gene Name: RP11-205M3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4314-4340
0.016
0
7mer
226-250
0.005
Not Conserved
7mer
131-150
0.005
0
6mer
2835-2852
0.001
0
XLOC_006862
hsa-miR-125a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014788
Biotype: transcript isomorph
Gene id: XLOC_006862
Gene Name: XLOC_006862
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-238
0.022
1
6mer
224-246
0.005
0
AC015849.16
hsa-miR-125a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000604907
Biotype: lincRNA
Gene id: ENSG00000270977
Gene Name: AC015849.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5295-5308
0.024
2
6mer
4854-4874
0.002
0
6mer
2947-2962
0.001
0
LINC00824
hsa-miR-125a-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520206
Biotype: lincRNA
Gene id: ENSG00000254275
Gene Name: LINC00824
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-172
0.012
2
7mer
723-738
0.007
0
6mer
1909-1935
0.004
2
7mer
1097-1120
0.003
1
CTC-529P8.1
hsa-miR-125a-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509139
Biotype: lincRNA
Gene id: ENSG00000250072
Gene Name: CTC-529P8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-198
0.027
4
RP11-885B4.2
hsa-miR-125a-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536497
Biotype: lincRNA
Gene id: ENSG00000255669
Gene Name: RP11-885B4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-197
0.027
1
XLOC_007218
hsa-miR-125a-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014536
Biotype: transcript isomorph
Gene id: XLOC_007218
Gene Name: XLOC_007218
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-171
0.012
2
7mer
722-737
0.007
0
6mer
1908-1934
0.004
2
7mer
1096-1119
0.003
1
RP11-30L3.2
hsa-miR-125a-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577641
Biotype: antisense
Gene id: ENSG00000266696
Gene Name: RP11-30L3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-80
0.013
0
7mer
120-138
0.011
0
6mer
74-100
0.003
0
DARS-AS1
hsa-miR-125a-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438432
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
613-628
0.024
3
6mer
71-98
0.003
Not Conserved
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