LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
H1FX-AS1
hsa-miR-125a-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000433902
Biotype: antisense
Gene id: ENSG00000206417
Gene Name: H1FX-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-73
0.023
8
8mer+mismatch
323-344
0.003
Not Conserved
6mer
164-180
0.001
0
RP11-519G16.5
hsa-miR-125a-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559553
Biotype: antisense
Gene id: ENSG00000259342
Gene Name: RP11-519G16.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-25
0.027
6
RP11-189E14.4
hsa-miR-125a-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561523
Biotype: lincRNA
Gene id: ENSG00000261623
Gene Name: RP11-189E14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3497-3516
0.011
1
6mer
1017-1042
0.003
2
6mer
3398-3422
0.003
1
6mer
3060-3087
0.002
3
6mer
2920-2933
0.002
3
6mer
2264-2288
0.002
1
6mer
2828-2848
0.002
2
7mer
1046-1066
0.001
0
RP11-173M1.8
hsa-miR-125a-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578929
Biotype: lincRNA
Gene id: ENSG00000264469
Gene Name: RP11-173M1.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-368
0.023
1
7mer
47-66
0.004
0
RP11-640N11.2
hsa-miR-125a-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000505153
Biotype: antisense
Gene id: ENSG00000250493
Gene Name: RP11-640N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-210
0.013
5
8mer
1243-1261
0.007
1
6mer
6235-6254
0.004
6
7mer
1456-1483
0.002
0
7mer
4916-4935
0.002
0
ALG1L9P
hsa-miR-125a-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000508969
Biotype: processed_transcript
Gene id: ENSG00000248671
Gene Name: ALG1L9P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
819-841
0.010
1
7mer
1091-1115
0.005
1
6mer
1568-1586
0.004
1
6mer
1236-1246
0.003
1
6mer
1340-1352
0.002
1
6mer
1410-1426
0.002
0
RP11-422J15.1
hsa-miR-125a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513875
Biotype: lincRNA
Gene id: ENSG00000249618
Gene Name: RP11-422J15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1379-1405
0.027
1
AC010148.1
hsa-miR-125a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000434572
Biotype: retained_intron
Gene id: ENSG00000235726
Gene Name: AC010148.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-65
0.027
4
MEG3
hsa-miR-125a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000520714
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1310-1332
0.014
3
7mer
438-451
0.013
1
RP11-219E7.2
hsa-miR-125a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555481
Biotype: antisense
Gene id: ENSG00000258642
Gene Name: RP11-219E7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-123
0.023
3
6mer
77-99
0.004
0
NEAT1
hsa-miR-125a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20730-20748
0.008
3
7mer
12806-12831
0.004
1
9mer
22409-22428
0.004
0
8mer
4522-4539
0.003
0
7mer
1682-1699
0.002
0
7mer
9968-9994
0.002
0
6mer
15267-15293
0.002
2
6mer
13773-13787
0.001
1
6mer
21437-21452
0.001
1
6mer
20786-20802
0.000
1
RP11-79H23.3
hsa-miR-125a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000565297
Biotype: lincRNA
Gene id: ENSG00000261618
Gene Name: RP11-79H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1969-1986
0.018
1
9mer
300-313
0.009
2
AC034110.1
hsa-miR-125a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000616078
Biotype: lincRNA
Gene id: ENSG00000276397
Gene Name: AC034110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-466
0.024
0
6mer
394-418
0.003
3
RP11-156K13.1
hsa-miR-125a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522768
Biotype: antisense
Gene id: ENSG00000253944
Gene Name: RP11-156K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-258
0.023
8
6mer
285-309
0.004
6
CTD-2530N21.5
hsa-miR-125a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000314927
Biotype: pseudogene
Gene id: ENSG00000177725
Gene Name: CTD-2530N21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-199
0.015
1
7mer
1726-1746
0.005
1
8mer
1375-1397
0.003
1
7mer
1245-1258
0.002
1
6mer
1779-1796
0.001
1
AC007131.2
hsa-miR-125a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412409
Biotype: lincRNA
Gene id: ENSG00000233891
Gene Name: AC007131.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
519-539
0.027
0
CTD-2530N21.5
hsa-miR-125a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000619681
Biotype: sense_overlapping
Gene id: ENSG00000177725
Gene Name: CTD-2530N21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-199
0.015
1
7mer
1731-1751
0.005
1
8mer
1380-1402
0.003
1
7mer
1250-1263
0.002
1
6mer
1784-1801
0.001
1
XLOC_002777
hsa-miR-125a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006170
Biotype: transcript isomorph
Gene id: XLOC_002777
Gene Name: XLOC_002777
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.019
0
6mer
203-216
0.008
1
RP4-756G23.5
hsa-miR-125a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000441316
Biotype: antisense
Gene id: ENSG00000235513
Gene Name: RP4-756G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1225-1250
0.012
6
7mer
220-244
0.007
1
7mer
121-143
0.004
0
6mer
811-824
0.004
9
LA16c-349E10.1
hsa-miR-125a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573609
Biotype: antisense
Gene id: ENSG00000262528
Gene Name: LA16c-349E10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
536-548
0.017
6
7mer
1111-1130
0.009
5
6mer
444-460
0.001
3
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