LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125a-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_007528
hsa-miR-125a-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016134
Biotype: transcript isomorph
Gene id: XLOC_007528
Gene Name: XLOC_007528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5479-5498
0.023
5
6mer
2970-2989
0.002
1
6mer
3052-3074
0.001
1
6mer
1604-1626
0.001
2
6mer
3069-3087
0.000
0
XLOC_009483
hsa-miR-125a-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019682
Biotype: transcript isomorph
Gene id: XLOC_009483
Gene Name: XLOC_009483
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3324-3347
0.008
1
8mer
3352-3375
0.007
0
6mer
391-418
0.003
0
7mer
2605-2631
0.003
0
7mer
3110-3132
0.003
1
6mer
2897-2918
0.002
1
7mer
1104-1121
0.002
Not Conserved
6mer
2529-2544
0.000
0
XLOC_000057
hsa-miR-125a-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000842
Biotype: transcript isomorph
Gene id: XLOC_000057
Gene Name: XLOC_000057
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-611
0.021
0
7mer
133-149
0.007
0
CTA-212A2.3
hsa-miR-125a-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8220-8235
0.006
0
7mer
6943-6966
0.002
0
7mer
1364-1388
0.002
0
7mer
8934-8948
0.002
Not Conserved
6mer
13635-13654
0.002
0
6mer
829-850
0.002
0
6mer
4606-4626
0.002
2
7mer
12692-12716
0.002
Not Conserved
6mer
14124-14141
0.002
0
6mer
2326-2349
0.001
Not Conserved
6mer
13043-13058
0.001
0
6mer
3363-3386
0.001
Not Conserved
7mer
1545-1566
0.001
0
7mer
1505-1525
0.001
0
7mer
3407-3428
0.001
Not Conserved
6mer
12203-12221
0.001
0
XLOC_000190
hsa-miR-125a-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000937
Biotype: transcript isomorph
Gene id: XLOC_000190
Gene Name: XLOC_000190
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1270-1294
0.021
1
6mer
4314-4329
0.004
0
7mer
2134-2157
0.001
Not Conserved
6mer
3607-3628
0.001
0
DDR1-AS1
hsa-miR-125a-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458361
Biotype: antisense
Gene id: ENSG00000237775
Gene Name: DDR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-396
0.007
1
7mer
238-262
0.006
0
7mer
413-436
0.005
0
7mer
3511-3528
0.004
0
7mer
3210-3226
0.002
0
7mer
3132-3151
0.002
0
RP11-323H21.3
hsa-miR-125a-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444708
Biotype: lincRNA
Gene id: ENSG00000236687
Gene Name: RP11-323H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
511-529
0.020
1
6mer
798-815
0.008
3
LINC01476
hsa-miR-125a-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577478
Biotype: lincRNA
Gene id: ENSG00000265313
Gene Name: LINC01476
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-217
0.027
1
RP11-379H18.1
hsa-miR-125a-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605778
Biotype: antisense
Gene id: ENSG00000271122
Gene Name: RP11-379H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4012-4039
0.014
1
7mer
3416-3443
0.007
1
7mer
3463-3484
0.004
1
7mer
2198-2219
0.002
1
CTD-2666L21.1
hsa-miR-125a-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000440004
Biotype: lincRNA
Gene id: ENSG00000234773
Gene Name: CTD-2666L21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-36
0.022
2
6mer
96-114
0.005
2
RP11-105N14.3
hsa-miR-125a-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426870
Biotype: lincRNA
Gene id: ENSG00000236193
Gene Name: RP11-105N14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-58
0.027
2
HOXC-AS2
hsa-miR-125a-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000604081
Biotype: retained_intron
Gene id: ENSG00000250133
Gene Name: HOXC-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-398
0.027
3
XLOC_002476
hsa-miR-125a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003490
Biotype: transcript isomorph
Gene id: XLOC_002476
Gene Name: XLOC_002476
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-58
0.027
2
LINC00887
hsa-miR-125a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000456816
Biotype: lincRNA
Gene id: ENSG00000214145
Gene Name: LINC00887
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-523
0.024
0
6mer
515-539
0.002
0
6mer
292-311
0.002
1
LOC648987
hsa-miR-125a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104650.1
Biotype: lincRNA
Gene id: NR_104650.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-149
0.023
1
6mer
473-496
0.004
0
XLOC_013861
hsa-miR-125a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028968
Biotype: transcript isomorph
Gene id: XLOC_013861
Gene Name: XLOC_013861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
93-119
0.015
0
6mer
174-194
0.012
0
FAM66C
hsa-miR-125a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540566
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
71-89
0.014
0
6mer
87-107
0.014
0
RP11-130C19.3
hsa-miR-125a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000608097
Biotype: antisense
Gene id: ENSG00000227914
Gene Name: RP11-130C19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-103
0.016
1
7mer
190-207
0.011
1
XLOC_009783
hsa-miR-125a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020451
Biotype: transcript isomorph
Gene id: XLOC_009783
Gene Name: XLOC_009783
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1467-1488
0.027
0
CTC-529P8.1
hsa-miR-125a-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507318
Biotype: lincRNA
Gene id: ENSG00000250072
Gene Name: CTC-529P8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-150
0.027
4
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept