LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
KB-1183D5.13
hsa-miR-125a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000416615
Biotype: lincRNA
Gene id: ENSG00000206142
Gene Name: KB-1183D5.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-495
0.010
1
8mer
707-727
0.006
0
6mer
129-156
0.005
0
6mer
815-833
0.004
1
6mer
1735-1751
0.002
Not Conserved
CTD-2203A3.1
hsa-miR-125a-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505899
Biotype: lincRNA
Gene id: ENSG00000248789
Gene Name: CTD-2203A3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
317-336
0.028
12
RP11-413M3.4
hsa-miR-125a-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439501
Biotype: antisense
Gene id: ENSG00000227512
Gene Name: RP11-413M3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-295
0.009
1
7mer
258-276
0.006
0
8mer
543-563
0.005
0
8mer
623-645
0.004
0
8mer
459-479
0.004
0
RP11-744K17.2
hsa-miR-125a-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582527
Biotype: lincRNA
Gene id: ENSG00000266885
Gene Name: RP11-744K17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3387-3404
0.010
0
6mer
478-499
0.006
1
6mer
1225-1242
0.005
1
6mer
757-783
0.004
0
6mer
472-487
0.003
0
AC005082.12
hsa-miR-125a-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000413042
Biotype: lincRNA
Gene id: ENSG00000226816
Gene Name: AC005082.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1164-1182
0.028
1
ASMTL-AS1
hsa-miR-125a-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420411
Biotype: antisense
Gene id: ENSG00000236017
Gene Name: ASMTL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
402-422
0.020
2
7mer
652-671
0.007
Not Conserved
CTC-529P8.1
hsa-miR-125a-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515304
Biotype: lincRNA
Gene id: ENSG00000250072
Gene Name: CTC-529P8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-167
0.028
4
RP11-159G9.5
hsa-miR-125a-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473136
Biotype: lincRNA
Gene id: ENSG00000229729
Gene Name: RP11-159G9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
751-776
0.028
9
RP11-755F10.3
hsa-miR-125a-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533576
Biotype: antisense
Gene id: ENSG00000254461
Gene Name: RP11-755F10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-468
0.021
5
6mer
511-537
0.007
11
FAM66C
hsa-miR-125a-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454799
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1884-1909
0.012
0
6mer
1778-1795
0.007
0
6mer
1510-1528
0.004
0
6mer
1526-1546
0.004
0
6mer
1591-1613
0.001
Not Conserved
RP11-586D19.1
hsa-miR-125a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508601
Biotype: lincRNA
Gene id: ENSG00000249896
Gene Name: RP11-586D19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2264-2288
0.008
0
7mer
2305-2329
0.006
1
9mer
952-970
0.004
1
6mer
1863-1889
0.003
1
6mer
476-501
0.003
2
6mer
1504-1525
0.002
0
6mer
554-569
0.002
2
LINC01141
hsa-miR-125a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423486
Biotype: lincRNA
Gene id: ENSG00000236963
Gene Name: LINC01141
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-189
0.028
0
MIR7515HG
hsa-miR-125a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455317
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-281
0.014
Not Conserved
7mer
146-172
0.013
1
MIR7515HG
hsa-miR-125a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000586753
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-536
0.014
1
8mer
623-645
0.014
Not Conserved
CTD-2234N14.2
hsa-miR-125a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000609688
Biotype: lincRNA
Gene id: ENSG00000272981
Gene Name: CTD-2234N14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
346-366
0.009
6
7mer
202-227
0.009
0
6mer
330-348
0.006
6
6mer
182-197
0.005
1
XLOC_000606
hsa-miR-125a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000415
Biotype: transcript isomorph
Gene id: XLOC_000606
Gene Name: XLOC_000606
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-365
0.028
0
RP11-553E24.2
hsa-miR-125a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563990
Biotype: lincRNA
Gene id: ENSG00000260477
Gene Name: RP11-553E24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-376
0.024
6
6mer
735-751
0.003
1
RP11-87C7.3
hsa-miR-125a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000611364
Biotype: lincRNA
Gene id: ENSG00000273552
Gene Name: RP11-87C7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
542-563
0.009
1
6mer
815-839
0.006
1
6mer
48-70
0.005
1
6mer
795-807
0.004
0
6mer
283-306
0.004
1
XLOC_012624
hsa-miR-125a-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026598
Biotype: transcript isomorph
Gene id: XLOC_012624
Gene Name: XLOC_012624
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-79
0.028
4
RP11-407B7.1
hsa-miR-125a-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598535
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-379
0.018
1
7mer
126-148
0.009
1
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