LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
CTA-544A11.1
hsa-miR-125a-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5545-5555
0.008
2
8mer
916-932
0.006
0
6mer
11744-11766
0.005
0
9mer
4608-4630
0.004
0
6mer
66-82
0.004
1
6mer
6534-6555
0.001
1
CTA-212A2.4
hsa-miR-125a-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623420
Biotype: lincRNA
Gene id: ENSG00000279927
Gene Name: CTA-212A2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3230-3249
0.009
1
7mer
3266-3290
0.007
1
7mer
328-343
0.005
0
7mer
2073-2097
0.003
1
7mer
1513-1537
0.002
0
8mer+mismatch
2793-2813
0.001
0
CTC-498J12.3
hsa-miR-125a-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504129
Biotype: antisense
Gene id: ENSG00000248664
Gene Name: CTC-498J12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-414
0.028
5
XLOC_006133
hsa-miR-125a-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013490
Biotype: transcript isomorph
Gene id: XLOC_006133
Gene Name: XLOC_006133
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-125
0.017
1
6mer
356-372
0.011
1
RBFADN
hsa-miR-125a-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000568911
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-53
0.011
0
8mer
4442-4461
0.006
1
6mer
854-870
0.003
1
7mer
2434-2455
0.002
Not Conserved
6mer
699-722
0.002
0
6mer
3262-3281
0.001
0
6mer
1775-1788
0.001
Not Conserved
6mer
3066-3081
0.001
0
6mer
1920-1945
0.001
1
6mer
1892-1908
0.001
0
AC006019.4
hsa-miR-125a-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451116
Biotype: antisense
Gene id: ENSG00000233363
Gene Name: AC006019.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2951-2975
0.014
3
8mer+wobble
2969-2984
0.007
0
6mer
315-334
0.003
Not Conserved
6mer
1084-1109
0.003
0
6mer
2033-2053
0.001
1
AC093901.1
hsa-miR-125a-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414886
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
556-573
0.028
10
XLOC_010769
hsa-miR-125a-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022430
Biotype: transcript isomorph
Gene id: XLOC_010769
Gene Name: XLOC_010769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1347-1362
0.018
1
6mer
548-572
0.007
1
6mer
338-362
0.003
Not Conserved
RP11-583F2.2
hsa-miR-125a-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583416
Biotype: lincRNA
Gene id: ENSG00000265912
Gene Name: RP11-583F2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1680-1704
0.010
1
7mer
514-539
0.007
0
7mer
892-909
0.006
1
6mer
1366-1389
0.004
0
RP11-131K5.2
hsa-miR-125a-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580134
Biotype: lincRNA
Gene id: ENSG00000265494
Gene Name: RP11-131K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1444-1465
0.011
1
6mer
1178-1194
0.009
1
6mer
760-787
0.008
1
XLOC_004885
hsa-miR-125a-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010378
Biotype: transcript isomorph
Gene id: XLOC_004885
Gene Name: XLOC_004885
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
308-327
0.020
1
6mer
532-536
0.008
2
AC068039.4
hsa-miR-125a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1983-2007
0.028
0
MGC27345
hsa-miR-125a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9875-9894
0.019
1
6mer
9898-9921
0.003
1
6mer
651-668
0.002
0
6mer
5355-5374
0.001
1
6mer
5928-5947
0.001
2
6mer
7763-7780
0.001
0
6mer
5600-5624
0.001
1
RP11-428K3.1
hsa-miR-125a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608517
Biotype: antisense
Gene id: ENSG00000273062
Gene Name: RP11-428K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1506-1526
0.025
5
6mer
1112-1138
0.003
6
PWARSN
hsa-miR-125a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022011.1
Biotype: sense
Gene id: NR_022011.1 (gene)
Gene Name: PWARSN
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1561-1582
0.013
1
7mer
1161-1182
0.009
1
7mer
1257-1276
0.004
0
6mer
668-689
0.002
0
SHANK3
hsa-miR-125a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414786
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7066-7082
0.012
6
6mer
6746-6769
0.004
9
7mer
836-854
0.003
1
6mer
1009-1033
0.002
5
6mer
728-754
0.002
4
6mer
6450-6469
0.001
Not Conserved
6mer
4276-4294
0.001
7
6mer
4025-4046
0.001
3
XLOC_006012
hsa-miR-125a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012871
Biotype: transcript isomorph
Gene id: XLOC_006012
Gene Name: XLOC_006012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1130-1148
0.028
1
XLOC_006739
hsa-miR-125a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014649
Biotype: transcript isomorph
Gene id: XLOC_006739
Gene Name: XLOC_006739
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
643-663
0.028
0
RP11-540A21.2
hsa-miR-125a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525154
Biotype: lincRNA
Gene id: ENSG00000245522
Gene Name: RP11-540A21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1478-1497
0.019
1
7mer
1639-1660
0.005
3
6mer
1698-1716
0.004
2
XLOC_010490
hsa-miR-125a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021896
Biotype: transcript isomorph
Gene id: XLOC_010490
Gene Name: XLOC_010490
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1557-1573
0.021
1
7mer
1567-1582
0.007
0
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