LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125a-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-523L20.2
hsa-miR-125a-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569726
Biotype: lincRNA
Gene id: ENSG00000261231
Gene Name: RP11-523L20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2546-2557
0.024
0
6mer
2476-2495
0.004
1
ST3GAL6-AS1
hsa-miR-125a-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475816
Biotype: antisense
Gene id: ENSG00000239445
Gene Name: ST3GAL6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-71
0.028
1
RP11-804H8.6
hsa-miR-125a-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608605
Biotype: lincRNA
Gene id: ENSG00000273356
Gene Name: RP11-804H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
626-643
0.017
3
7mer
1286-1309
0.012
4
RP11-407B7.1
hsa-miR-125a-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432154
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-95
0.023
1
8mer+wobble
1672-1693
0.005
1
6mer
1186-1204
0.001
1
RP11-657O9.1
hsa-miR-125a-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466206
Biotype: lincRNA
Gene id: ENSG00000240086
Gene Name: RP11-657O9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-60
0.028
4
XLOC_010651
hsa-miR-125a-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021516
Biotype: transcript isomorph
Gene id: XLOC_010651
Gene Name: XLOC_010651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2529-2555
0.026
1
6mer
2575-2596
0.002
1
RP11-809H16.5
hsa-miR-125a-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559870
Biotype: lincRNA
Gene id: ENSG00000259222
Gene Name: RP11-809H16.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-267
0.024
2
6mer
14-36
0.004
1
RP11-1007O24.3
hsa-miR-125a-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565181
Biotype: lincRNA
Gene id: ENSG00000261423
Gene Name: RP11-1007O24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2170-2186
0.027
8
6mer
1034-1052
0.002
1
XLOC_013981
hsa-miR-125a-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028752
Biotype: transcript isomorph
Gene id: XLOC_013981
Gene Name: XLOC_013981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9242-9262
0.020
2
6mer
1208-1232
0.002
1
8mer
3918-3938
0.001
1
6mer
2496-2510
0.001
0
7mer
3982-4006
0.001
1
6mer
6318-6339
0.001
0
8mer+mismatch
3792-3817
0.000
0
6mer
2538-2559
0.000
Not Conserved
6mer
5213-5235
0.000
0
6mer
5022-5048
0.000
0
6mer
5073-5098
0.000
1
LINC00964
hsa-miR-125a-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000504665
Biotype: lincRNA
Gene id: ENSG00000249816
Gene Name: LINC00964
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-457
0.026
0
6mer
450-466
0.002
0
CTD-2382E5.6
hsa-miR-125a-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000622261
Biotype: sense_intronic
Gene id: ENSG00000278493
Gene Name: CTD-2382E5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
399-420
0.020
1
6mer
43-55
0.005
0
6mer
345-363
0.003
0
C21orf67
hsa-miR-125a-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_027128.1
Biotype: lincRNA
Gene id: NR_027128.1 (gene)
Gene Name: C21orf67
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
27-48
0.010
2
7mer
50-66
0.008
0
8mer
794-812
0.005
1
6mer
714-738
0.002
1
6mer
1788-1814
0.002
Not Conserved
6mer
641-661
0.001
0
LINC00674
hsa-miR-125a-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620266
Biotype: lincRNA
Gene id: ENSG00000278730
Gene Name: LINC00674
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1595-1619
0.011
0
7mer
92-112
0.008
1
6mer
2817-2840
0.005
0
8mer+wobble
2121-2146
0.004
2
LINC01476
hsa-miR-125a-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584262
Biotype: lincRNA
Gene id: ENSG00000265313
Gene Name: LINC01476
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-178
0.028
1
XLOC_011380
hsa-miR-125a-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023547
Biotype: transcript isomorph
Gene id: XLOC_011380
Gene Name: XLOC_011380
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2977-2991
0.020
0
8mer
840-858
0.006
0
7mer
1536-1554
0.002
1
FAM224A
hsa-miR-125a-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000419557
Biotype: lincRNA
Gene id: ENSG00000233522
Gene Name: FAM224A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1841-1863
0.028
0
RP11-407B7.1
hsa-miR-125a-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593326
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
674-697
0.022
1
6mer
228-249
0.005
2
6mer
401-420
0.002
0
RP11-164H13.1
hsa-miR-125a-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000547644
Biotype: antisense
Gene id: ENSG00000257275
Gene Name: RP11-164H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
590-613
0.023
4
7mer
274-293
0.005
0
SNHG14
hsa-miR-125a-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557108
Biotype: retained_intron
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2978-2999
0.012
1
7mer
2578-2599
0.008
1
7mer
2674-2693
0.004
0
6mer
1129-1151
0.003
1
6mer
2085-2106
0.002
0
XLOC_005081
hsa-miR-125a-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010554
Biotype: transcript isomorph
Gene id: XLOC_005081
Gene Name: XLOC_005081
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4002-4021
0.011
9
7mer
2112-2126
0.009
10
6mer
3930-3947
0.005
8
6mer
3546-3566
0.003
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept