LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
CTD-2516F10.2
hsa-miR-125a-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530201
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-235
0.029
3
XLOC_013455
hsa-miR-125a-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028101
Biotype: transcript isomorph
Gene id: XLOC_013455
Gene Name: XLOC_013455
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
110-131
0.015
0
8mer
1157-1173
0.014
0
XLOC_002580
hsa-miR-125a-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005950
Biotype: transcript isomorph
Gene id: XLOC_002580
Gene Name: XLOC_002580
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-211
0.029
2
HCG25
hsa-miR-125a-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000450514
Biotype: antisense
Gene id: ENSG00000232940
Gene Name: HCG25
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-325
0.029
7
XLOC_010940
hsa-miR-125a-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022639
Biotype: transcript isomorph
Gene id: XLOC_010940
Gene Name: XLOC_010940
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
392-410
0.021
3
6mer
403-429
0.005
3
6mer
98-111
0.002
Not Conserved
XLOC_003240
hsa-miR-125a-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006650
Biotype: transcript isomorph
Gene id: XLOC_003240
Gene Name: XLOC_003240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-501
0.007
1
7mer
4689-4703
0.004
1
6mer
9011-9028
0.003
2
6mer
9029-9053
0.003
Not Conserved
6mer
742-762
0.003
1
6mer
9017-9034
0.002
1
6mer
9023-9032
0.002
Not Conserved
6mer
5625-5649
0.001
0
6mer
1767-1785
0.001
1
6mer
6718-6736
0.001
1
6mer
7744-7769
0.001
1
6mer
2842-2865
0.001
0
XLOC_005477
hsa-miR-125a-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012606
Biotype: transcript isomorph
Gene id: XLOC_005477
Gene Name: XLOC_005477
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
128-142
0.020
Not Conserved
7mer
230-250
0.009
0
KIAA1875
hsa-miR-125a-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_024207.1
Biotype: sense
Gene id: NR_024207.1 (gene)
Gene Name: KIAA1875
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6975-6997
0.006
0
6mer
61-82
0.004
1
6mer
400-423
0.004
3
7mer
5776-5799
0.003
1
6mer
1825-1847
0.002
7
8mer
4422-4446
0.002
2
7mer
1586-1612
0.002
2
6mer
5725-5747
0.001
0
6mer
604-626
0.001
1
6mer
1494-1518
0.001
5
6mer
1078-1103
0.001
1
7mer
2611-2635
0.001
0
6mer
2679-2702
0.001
0
LOC100131289
hsa-miR-125a-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038929.1
Biotype: lincRNA
Gene id: NR_038929.1 (gene)
Gene Name: LOC100131289
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-500
0.029
1
AC003075.4
hsa-miR-125a-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415246
Biotype: antisense
Gene id: ENSG00000237773
Gene Name: AC003075.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-514
0.029
1
AC007879.7
hsa-miR-125a-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430494
Biotype: lincRNA
Gene id: ENSG00000229647
Gene Name: AC007879.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-80
0.017
3
8mer
772-792
0.012
0
CTA-363E6.5
hsa-miR-125a-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568635
Biotype: antisense
Gene id: ENSG00000260681
Gene Name: CTA-363E6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
633-651
0.017
1
6mer
421-442
0.005
0
6mer
534-559
0.004
1
6mer
384-402
0.003
1
LINC00550
hsa-miR-125a-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038878.1
Biotype: lincRNA
Gene id: NR_038878.1 (gene)
Gene Name: LINC00550
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2532-2558
0.026
1
6mer
2578-2599
0.002
1
RP11-448A19.1
hsa-miR-125a-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608694
Biotype: lincRNA
Gene id: ENSG00000273329
Gene Name: RP11-448A19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6584-6601
0.013
5
8mer
5152-5170
0.012
1
7mer
1720-1745
0.002
2
6mer
2045-2068
0.001
1
RP11-664I21.5
hsa-miR-125a-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524453
Biotype: antisense
Gene id: ENSG00000254568
Gene Name: RP11-664I21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
673-689
0.029
7
XLOC_012103
hsa-miR-125a-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025299
Biotype: transcript isomorph
Gene id: XLOC_012103
Gene Name: XLOC_012103
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-388
0.015
2
7mer
916-937
0.010
1
6mer
11-34
0.004
1
FOXP1-AS1
hsa-miR-125a-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465742
Biotype: antisense
Gene id: ENSG00000244203
Gene Name: FOXP1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
561-577
0.026
11
6mer
245-268
0.002
0
RP11-728K20.2
hsa-miR-125a-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000565102
Biotype: lincRNA
Gene id: ENSG00000260555
Gene Name: RP11-728K20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-94
0.016
3
8mer+wobble
61-76
0.006
Not Conserved
6mer
2711-2730
0.003
0
6mer
1936-1961
0.003
Not Conserved
6mer
992-1012
0.001
0
RP11-480D4.6
hsa-miR-125a-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607691
Biotype: lincRNA
Gene id: ENSG00000272049
Gene Name: RP11-480D4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
317-332
0.028
0
RP11-883G14.4
hsa-miR-125a-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569009
Biotype: lincRNA
Gene id: ENSG00000260620
Gene Name: RP11-883G14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-464
0.028
2
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