LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009653
hsa-miR-125a-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020322
Biotype: transcript isomorph
Gene id: XLOC_009653
Gene Name: XLOC_009653
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
327-343
0.018
0
6mer
87-113
0.008
2
6mer
168-188
0.003
1
OIP5-AS1
hsa-miR-125a-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8762-8777
0.014
5
7mer
5447-5459
0.005
0
7mer
911-933
0.004
Not Conserved
7mer
950-974
0.002
0
6mer
2427-2444
0.002
1
6mer
7769-7787
0.001
0
6mer
3489-3512
0.001
0
RP11-429K17.1
hsa-miR-125a-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577173
Biotype: antisense
Gene id: ENSG00000263237
Gene Name: RP11-429K17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-93
0.029
Not Conserved
RP3-340N1.2
hsa-miR-125a-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431027
Biotype: lincRNA
Gene id: ENSG00000227066
Gene Name: RP3-340N1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1230-1249
0.013
1
6mer
979-993
0.009
1
6mer
1433-1454
0.004
0
6mer
1778-1792
0.003
0
TCL6
hsa-miR-125a-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000497248
Biotype: retained_intron
Gene id: ENSG00000187621
Gene Name: TCL6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2707-2732
0.011
1
7mer
259-284
0.008
1
6mer
28-49
0.004
1
6mer
307-323
0.003
1
6mer
833-854
0.002
1
6mer
885-903
0.000
Not Conserved
ISM1-AS1
hsa-miR-125a-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000431407
Biotype: antisense
Gene id: ENSG00000226263
Gene Name: ISM1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
310-329
0.025
1
6mer
557-578
0.004
0
LEMD1-AS1
hsa-miR-125a-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447832
Biotype: antisense
Gene id: ENSG00000226235
Gene Name: LEMD1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-100
0.025
1
6mer
754-771
0.002
0
6mer
1150-1166
0.001
3
6mer
1772-1793
0.001
0
RP11-333I13.1
hsa-miR-125a-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000568862
Biotype: lincRNA
Gene id: ENSG00000260977
Gene Name: RP11-333I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
60-84
0.008
1
7mer
159-178
0.008
1
8mer
1975-1993
0.006
1
6mer
19-43
0.004
0
6mer
2125-2139
0.003
1
CTD-2240E14.4
hsa-miR-125a-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589622
Biotype: antisense
Gene id: ENSG00000267387
Gene Name: CTD-2240E14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
663-689
0.016
2
7mer
428-453
0.007
2
6mer
50-68
0.006
1
C21orf67
hsa-miR-125a-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000615847
Biotype: lincRNA
Gene id: ENSG00000183250
Gene Name: C21orf67
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1264-1282
0.009
1
6mer
497-518
0.006
2
7mer
520-536
0.006
0
6mer
1184-1208
0.003
1
6mer
321-337
0.002
1
6mer
398-421
0.002
1
6mer
1111-1131
0.002
0
FAM182A
hsa-miR-125a-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000376398
Biotype: lincRNA
Gene id: ENSG00000125804
Gene Name: FAM182A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4152-4170
0.003
0
8mer
4190-4207
0.003
Not Conserved
6mer
4277-4297
0.002
0
6mer
3982-4005
0.002
0
7mer
3145-3168
0.001
Not Conserved
7mer
3703-3718
0.001
Not Conserved
6mer
4079-4096
0.001
0
6mer
4199-4225
0.001
0
6mer
1246-1263
0.001
Not Conserved
6mer
2116-2141
0.001
Not Conserved
6mer
3840-3860
0.001
0
6mer
4320-4334
0.001
0
7mer
2640-2655
0.001
Not Conserved
6mer
3728-3752
0.001
Not Conserved
6mer
1483-1501
0.001
Not Conserved
6mer
2906-2929
0.001
Not Conserved
6mer
3424-3440
0.001
Not Conserved
6mer
1293-1318
0.001
Not Conserved
6mer
2741-2765
0.000
Not Conserved
6mer
3325-3351
0.000
Not Conserved
6mer
2175-2195
0.000
Not Conserved
6mer
2833-2857
0.000
Not Conserved
6mer
2584-2600
0.000
Not Conserved
6mer
3262-3277
0.000
Not Conserved
6mer
2962-2985
0.000
Not Conserved
6mer
1347-1372
0.000
Not Conserved
6mer
3462-3477
0.000
Not Conserved
6mer
3600-3624
0.000
Not Conserved
6mer
2271-2295
0.000
Not Conserved
6mer
1550-1572
0.000
Not Conserved
6mer
2311-2331
0.000
Not Conserved
6mer
2869-2893
0.000
Not Conserved
6mer
2409-2423
0.000
Not Conserved
6mer
3551-3568
0.000
Not Conserved
6mer
3744-3769
0.000
0
6mer
2513-2533
0.000
Not Conserved
6mer
3661-3680
0.000
Not Conserved
XLOC_003895
hsa-miR-125a-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008444
Biotype: transcript isomorph
Gene id: XLOC_003895
Gene Name: XLOC_003895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-169
0.029
1
RP11-166D19.1
hsa-miR-125a-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532315
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
182-197
0.026
3
6mer
576-593
0.004
4
HAS2-AS1
hsa-miR-125a-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514180
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1307-1331
0.026
1
6mer
1297-1316
0.004
1
XLOC_003125
hsa-miR-125a-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006511
Biotype: transcript isomorph
Gene id: XLOC_003125
Gene Name: XLOC_003125
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-61
0.029
0
XLOC_013968
hsa-miR-125a-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029050
Biotype: transcript isomorph
Gene id: XLOC_013968
Gene Name: XLOC_013968
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
560-583
0.005
0
6mer
494-518
0.003
0
6mer
606-628
0.002
1
6mer
528-550
0.002
3
6mer
724-740
0.002
3
7mer
856-879
0.002
0
6mer
754-772
0.002
2
6mer
824-846
0.002
3
6mer
512-534
0.002
1
6mer
654-676
0.001
1
6mer
886-910
0.001
Not Conserved
7mer
798-821
0.001
Not Conserved
6mer
782-804
0.001
Not Conserved
6mer
840-862
0.001
2
6mer
692-708
0.001
0
6mer
924-942
0.001
1
RP11-744N12.3
hsa-miR-125a-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501648
Biotype: antisense
Gene id: ENSG00000245008
Gene Name: RP11-744N12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1720-1745
0.019
0
7mer
1192-1206
0.007
4
8mer+wobble
1851-1877
0.003
2
XLOC_011939
hsa-miR-125a-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024649
Biotype: transcript isomorph
Gene id: XLOC_011939
Gene Name: XLOC_011939
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-143
0.026
1
6mer
219-242
0.003
2
MIR143HG
hsa-miR-125a-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602964
Biotype: lincRNA
Gene id: ENSG00000249669
Gene Name: MIR143HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
8357-8380
0.007
0
8mer
6946-6963
0.007
1
7mer
2241-2262
0.005
8
7mer
7471-7495
0.004
1
6mer
162-181
0.002
3
6mer
3957-3982
0.002
4
6mer
7217-7241
0.001
1
6mer
6052-6070
0.001
0
6mer
1362-1382
0.001
1
RP11-266K4.9
hsa-miR-125a-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000304751
Biotype: lincRNA
Gene id: ENSG00000215241
Gene Name: RP11-266K4.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-189
0.029
4
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