LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
RAB4B-EGLN2
hsa-miR-125a-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037791.1
Biotype: sense
Gene id: NR_037791.1 (gene)
Gene Name: RAB4B-EGLN2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1955-1977
0.023
7
7mer
2460-2476
0.004
0
6mer
2231-2246
0.003
1
XLOC_011422
hsa-miR-125a-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023623
Biotype: transcript isomorph
Gene id: XLOC_011422
Gene Name: XLOC_011422
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
388-401
0.030
3
LINC00839
hsa-miR-125a-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424751
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1951-1965
0.012
1
6mer
1158-1169
0.006
1
6mer
689-707
0.006
0
6mer
191-210
0.003
0
6mer
457-476
0.002
0
RP11-13K12.1
hsa-miR-125a-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591283
Biotype: lincRNA
Gene id: ENSG00000267506
Gene Name: RP11-13K12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4672-4695
0.003
0
6mer
4308-4323
0.002
0
6mer
4470-4492
0.002
0
6mer
4414-4429
0.002
0
6mer
4202-4217
0.001
0
6mer
4096-4111
0.001
Not Conserved
6mer
3937-3952
0.001
0
6mer
3725-3740
0.001
0
6mer
2877-2892
0.001
0
6mer
4154-4164
0.001
Not Conserved
6mer
3767-3793
0.001
0
6mer
3831-3846
0.001
0
6mer
3995-4005
0.001
Not Conserved
6mer
3884-3899
0.001
0
6mer
4048-4058
0.001
Not Conserved
6mer
3666-3687
0.001
0
6mer
3624-3634
0.001
0
6mer
3396-3422
0.001
0
6mer
3460-3475
0.001
0
6mer
3566-3581
0.001
0
6mer
3078-3104
0.001
0
6mer
2977-2998
0.001
0
6mer
3295-3316
0.001
0
6mer
3036-3051
0.001
0
6mer
3354-3369
0.001
0
6mer
3142-3157
0.001
0
6mer
3513-3528
0.000
Not Conserved
6mer
3195-3210
0.000
0
6mer
2935-2945
0.000
0
6mer
3253-3263
0.000
0
XLOC_007858
hsa-miR-125a-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015886
Biotype: transcript isomorph
Gene id: XLOC_007858
Gene Name: XLOC_007858
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
701-728
0.020
0
6mer
336-349
0.003
0
6mer
2296-2312
0.001
0
6mer
3917-3939
0.001
0
6mer
943-961
0.001
0
6mer
2544-2561
0.001
1
6mer
857-880
0.001
0
7mer
3515-3539
0.001
0
LINC00839
hsa-miR-125a-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429940
Biotype: lincRNA
Gene id: ENSG00000185904
Gene Name: LINC00839
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1952-1966
0.012
1
6mer
1159-1170
0.006
1
6mer
690-708
0.006
0
6mer
276-295
0.003
0
6mer
458-477
0.002
0
RP4-594I10.3
hsa-miR-125a-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000577528
Biotype: lincRNA
Gene id: ENSG00000264443
Gene Name: RP4-594I10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1011-1026
0.023
2
6mer
20-43
0.004
1
6mer
1157-1173
0.003
2
LOC101926900
hsa-miR-125a-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_109756.1
Biotype: lincRNA
Gene id: NR_109756.1 (gene)
Gene Name: LOC101926900
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
456-472
0.025
2
7mer
41-64
0.004
1
PAX8-AS1
hsa-miR-125a-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
464-489
0.009
1
8mer
645-660
0.008
1
7mer
2892-2912
0.004
2
6mer
9660-9673
0.002
5
6mer
1571-1586
0.001
3
6mer
373-387
0.001
Not Conserved
7mer
7106-7129
0.001
4
6mer
4072-4096
0.001
1
6mer
2404-2426
0.001
1
7mer
4126-4150
0.001
3
MIR7515HG
hsa-miR-125a-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591018
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-408
0.011
Not Conserved
7mer
273-299
0.011
1
6mer
942-968
0.006
2
6mer
866-890
0.002
0
RP11-655C2.3
hsa-miR-125a-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527054
Biotype: lincRNA
Gene id: ENSG00000255299
Gene Name: RP11-655C2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
487-507
0.029
2
RP11-397A16.3
hsa-miR-125a-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-89
0.029
1
RP11-370A5.1
hsa-miR-125a-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581177
Biotype: antisense
Gene id: ENSG00000266850
Gene Name: RP11-370A5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-197
0.029
9
RRS1-AS1
hsa-miR-125a-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499642
Biotype: lincRNA
Gene id: ENSG00000246145
Gene Name: RRS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4271-4290
0.009
1
7mer
3135-3158
0.009
3
7mer
4081-4105
0.007
1
6mer
1232-1257
0.002
1
6mer
2831-2854
0.002
1
XLOC_000191
hsa-miR-125a-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1834-1858
0.016
0
7mer
1884-1908
0.013
0
RP11-179K3.2
hsa-miR-125a-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425902
Biotype: lincRNA
Gene id: ENSG00000224714
Gene Name: RP11-179K3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-392
0.029
1
TMEM147-AS1
hsa-miR-125a-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590717
Biotype: antisense
Gene id: ENSG00000236144
Gene Name: TMEM147-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
31-47
0.010
1
7mer
2482-2507
0.007
1
7mer
61-79
0.006
0
6mer
115-133
0.002
1
7mer
2265-2288
0.002
0
6mer
264-289
0.002
1
XLOC_009421
hsa-miR-125a-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019621
Biotype: transcript isomorph
Gene id: XLOC_009421
Gene Name: XLOC_009421
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-133
0.023
0
6mer
182-206
0.006
1
ZBTB20-AS1
hsa-miR-125a-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496219
Biotype: antisense
Gene id: ENSG00000241560
Gene Name: ZBTB20-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-70
0.029
14
AFAP1-AS1
hsa-miR-125a-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608442
Biotype: antisense
Gene id: ENSG00000272620
Gene Name: AFAP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5639-5660
0.013
1
7mer
4411-4436
0.004
1
7mer
665-689
0.003
4
6mer
302-316
0.003
2
6mer
5074-5092
0.002
0
6mer
923-946
0.001
0
6mer
2406-2431
0.001
1
6mer
5441-5459
0.001
Not Conserved
6mer
1658-1680
0.001
0
6mer
1748-1768
0.001
0
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