LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
STAU2-AS1
hsa-miR-125a-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_038406.1
Biotype: antisense
Gene id: NR_038406.1 (gene)
Gene Name: STAU2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1942-1967
0.012
1
7mer
1852-1873
0.007
1
7mer
1813-1832
0.006
0
7mer
479-501
0.005
1
DNAH17-AS1
hsa-miR-125a-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000598378
Biotype: retained_intron
Gene id: ENSG00000267432
Gene Name: DNAH17-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4531-4554
0.007
8
6mer
4222-4241
0.005
5
6mer
4113-4133
0.004
5
6mer
4059-4080
0.003
1
6mer
1984-2004
0.002
4
6mer
2862-2887
0.001
7
9mer
2703-2727
0.001
5
6mer
2596-2606
0.001
1
7mer
2405-2430
0.001
0
6mer
3583-3605
0.001
0
6mer
1480-1494
0.001
1
6mer
1662-1679
0.001
1
6mer
1094-1114
0.001
1
6mer
1064-1080
0.001
1
XLOC_010919
hsa-miR-125a-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022357
Biotype: transcript isomorph
Gene id: XLOC_010919
Gene Name: XLOC_010919
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
663-686
0.013
4
7mer
1720-1742
0.010
1
7mer
347-366
0.005
0
6mer
903-922
0.002
1
RP1-43E13.2
hsa-miR-125a-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437898
Biotype: antisense
Gene id: ENSG00000230424
Gene Name: RP1-43E13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-101
0.030
9
RP11-54H7.4
hsa-miR-125a-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618966
Biotype: lincRNA
Gene id: ENSG00000275216
Gene Name: RP11-54H7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1549-1567
0.016
Not Conserved
7mer
3883-3905
0.009
5
6mer
717-744
0.004
0
6mer
358-376
0.002
0
RP11-474D1.3
hsa-miR-125a-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567788
Biotype: lincRNA
Gene id: ENSG00000214039
Gene Name: RP11-474D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-235
0.012
0
7mer
706-720
0.006
0
6mer
4001-4026
0.005
1
6mer
4402-4421
0.003
0
6mer
978-998
0.002
0
6mer
3431-3453
0.001
1
6mer
1971-1992
0.001
1
6mer
2899-2913
0.001
0
RP11-488P3.1
hsa-miR-125a-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433544
Biotype: sense_intronic
Gene id: ENSG00000230439
Gene Name: RP11-488P3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
279-299
0.018
1
7mer
1439-1456
0.009
1
6mer
1049-1071
0.003
4
RP11-398K22.12
hsa-miR-125a-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000441363
Biotype: antisense
Gene id: ENSG00000229852
Gene Name: RP11-398K22.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2349-2365
0.028
0
6mer
1134-1157
0.002
1
XLOC_010268
hsa-miR-125a-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021007
Biotype: transcript isomorph
Gene id: XLOC_010268
Gene Name: XLOC_010268
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-413
0.027
2
6mer
274-298
0.003
0
RP11-114O18.1
hsa-miR-125a-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608123
Biotype: lincRNA
Gene id: ENSG00000273406
Gene Name: RP11-114O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
174-195
0.030
4
VIPR1-AS1
hsa-miR-125a-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598837
Biotype: antisense
Gene id: ENSG00000232354
Gene Name: VIPR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-92
0.013
1
8mer
239-255
0.009
1
7mer
351-365
0.006
2
6mer
555-570
0.002
1
XLOC_003808
hsa-miR-125a-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007688
Biotype: transcript isomorph
Gene id: XLOC_003808
Gene Name: XLOC_003808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5218-5241
0.015
4
6mer
406-418
0.004
0
6mer
6245-6268
0.004
6
7mer
6554-6569
0.003
1
8mer
6583-6603
0.002
1
7mer
2073-2093
0.002
0
6mer
6595-6615
0.000
0
LINC01115
hsa-miR-125a-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415700
Biotype: lincRNA
Gene id: ENSG00000237667
Gene Name: LINC01115
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-88
0.018
1
9mer
189-208
0.007
0
6mer
26-46
0.005
1
XLOC_012997
hsa-miR-125a-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1409-1431
0.030
1
STAU2-AS1
hsa-miR-125a-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517604
Biotype: antisense
Gene id: ENSG00000253302
Gene Name: STAU2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1942-1967
0.012
1
7mer
1852-1873
0.007
1
7mer
1813-1832
0.006
0
7mer
479-501
0.005
1
XLOC_001584
hsa-miR-125a-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002947
Biotype: transcript isomorph
Gene id: XLOC_001584
Gene Name: XLOC_001584
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-50
0.025
2
6mer
227-242
0.005
0
RAMP2-AS1
hsa-miR-125a-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592670
Biotype: lincRNA
Gene id: ENSG00000197291
Gene Name: RAMP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
220-241
0.006
0
7mer
329-353
0.006
1
7mer
370-394
0.006
0
6mer
2560-2582
0.004
4
6mer
995-1007
0.002
4
6mer
2734-2756
0.002
1
6mer
2257-2271
0.002
1
6mer
1979-1999
0.001
1
SNHG3
hsa-miR-125a-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413987
Biotype: retained_intron
Gene id: ENSG00000242125
Gene Name: SNHG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2162-2178
0.021
0
6mer
412-438
0.004
0
7mer
1788-1807
0.003
0
6mer
693-711
0.001
0
AC159540.2
hsa-miR-125a-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000619740
Biotype: lincRNA
Gene id: ENSG00000278766
Gene Name: AC159540.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-60
0.025
2
6mer
237-252
0.005
0
XLOC_001826
hsa-miR-125a-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003088
Biotype: transcript isomorph
Gene id: XLOC_001826
Gene Name: XLOC_001826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-241
0.018
3
8mer
1002-1022
0.012
0
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