LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125a-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_003061
hsa-miR-125a-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007127
Biotype: transcript isomorph
Gene id: XLOC_003061
Gene Name: XLOC_003061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1151-1168
0.011
1
7mer
36-60
0.010
1
7mer
4575-4598
0.004
0
6mer
3243-3269
0.003
1
6mer
6824-6837
0.003
1
6mer
1816-1834
0.001
Not Conserved
AC007563.1
hsa-miR-125a-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418591
Biotype: lincRNA
Gene id: ENSG00000236295
Gene Name: AC007563.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2685-2702
0.013
1
7mer
2518-2531
0.011
0
7mer
1120-1139
0.004
1
6mer
1778-1793
0.002
4
LHFPL3-AS2
hsa-miR-125a-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_027374.1
Biotype: antisense
Gene id: NR_027374.1 (gene)
Gene Name: LHFPL3-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
398-418
0.014
1
6mer
290-314
0.006
3
6mer
1534-1558
0.004
0
6mer
784-807
0.003
1
6mer
1328-1350
0.002
1
6mer
361-378
0.002
1
RP11-335K5.2
hsa-miR-125a-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559120
Biotype: antisense
Gene id: ENSG00000259555
Gene Name: RP11-335K5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1715-1736
0.014
1
7mer
1808-1830
0.008
1
6mer
878-895
0.004
3
7mer
332-354
0.003
1
6mer
310-331
0.002
1
AC003075.4
hsa-miR-125a-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452249
Biotype: antisense
Gene id: ENSG00000237773
Gene Name: AC003075.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-372
0.031
1
XLOC_005053
hsa-miR-125a-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00011070
Biotype: transcript isomorph
Gene id: XLOC_005053
Gene Name: XLOC_005053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1045-1065
0.014
1
7mer
1223-1241
0.010
1
6mer
760-779
0.004
1
8mer
718-740
0.003
0
RP11-413B19.2
hsa-miR-125a-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547168
Biotype: antisense
Gene id: ENSG00000257228
Gene Name: RP11-413B19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
684-710
0.029
1
6mer
829-850
0.002
0
CTD-2026K11.6
hsa-miR-125a-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000435356
Biotype: antisense
Gene id: ENSG00000203392
Gene Name: CTD-2026K11.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
786-800
0.014
1
7mer
1752-1777
0.009
1
6mer
86-102
0.003
1
6mer
1512-1536
0.002
0
6mer
1003-1016
0.002
1
RP11-689P11.2
hsa-miR-125a-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000528132
Biotype: lincRNA
Gene id: ENSG00000205959
Gene Name: RP11-689P11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
163-181
0.028
2
6mer
88-114
0.003
0
CPB2-AS1
hsa-miR-125a-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606991
Biotype: antisense
Gene id: ENSG00000235903
Gene Name: CPB2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3041-3064
0.018
1
8mer
447-470
0.009
0
7mer
1658-1679
0.002
0
7mer
1754-1773
0.001
0
RP11-255G12.3
hsa-miR-125a-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556762
Biotype: lincRNA
Gene id: ENSG00000258808
Gene Name: RP11-255G12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-191
0.030
2
RP11-299H22.6
hsa-miR-125a-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568092
Biotype: lincRNA
Gene id: ENSG00000261296
Gene Name: RP11-299H22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3401-3426
0.016
1
7mer
1609-1628
0.007
1
6mer
1320-1336
0.005
1
6mer
1561-1585
0.003
1
CTA-280A3.2
hsa-miR-125a-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623760
Biotype: lincRNA
Gene id: ENSG00000279712
Gene Name: CTA-280A3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8243-8263
0.007
1
8mer
3547-3566
0.007
0
7mer
8090-8102
0.004
1
6mer
4220-4239
0.003
1
6mer
4798-4822
0.002
0
6mer
2507-2529
0.002
5
6mer
3185-3203
0.002
0
6mer
6018-6042
0.001
1
6mer
5398-5421
0.001
0
6mer
3295-3318
0.001
1
6mer
5472-5483
0.001
1
6mer
4865-4889
0.000
1
6mer
4514-4530
0.000
0
RP11-218D6.4
hsa-miR-125a-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425137
Biotype: lincRNA
Gene id: ENSG00000233472
Gene Name: RP11-218D6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-49
0.030
0
XLOC_002455
hsa-miR-125a-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004551
Biotype: transcript isomorph
Gene id: XLOC_002455
Gene Name: XLOC_002455
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-344
0.029
1
6mer
1254-1277
0.002
Not Conserved
XLOC_012894
hsa-miR-125a-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026576
Biotype: transcript isomorph
Gene id: XLOC_012894
Gene Name: XLOC_012894
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-467
0.014
1
7mer
1213-1238
0.013
1
7mer
2183-2204
0.004
0
AC025442.3
hsa-miR-125a-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000521596
Biotype: antisense
Gene id: ENSG00000253744
Gene Name: AC025442.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-306
0.030
9
CTD-2201E18.3
hsa-miR-125a-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499871
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
122-144
0.024
1
6mer
1193-1215
0.007
1
XLOC_013265
hsa-miR-125a-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027227
Biotype: transcript isomorph
Gene id: XLOC_013265
Gene Name: XLOC_013265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-447
0.030
0
LOC648987
hsa-miR-125a-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034086.1
Biotype: lincRNA
Gene id: NR_034086.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-149
0.024
1
6mer
1082-1104
0.007
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept