LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
RP1-290I10.3
hsa-miR-125a-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000420389
Biotype: lincRNA
Gene id: ENSG00000228478
Gene Name: RP1-290I10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-285
0.020
9
7mer
509-529
0.008
3
6mer
472-490
0.003
2
CTD-2017D11.1
hsa-miR-125a-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594934
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1610-1630
0.014
1
6mer
471-495
0.009
1
6mer
794-805
0.009
1
XLOC_011577
hsa-miR-125a-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023781
Biotype: transcript isomorph
Gene id: XLOC_011577
Gene Name: XLOC_011577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-236
0.031
1
RP13-895J2.7
hsa-miR-125a-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537720
Biotype: antisense
Gene id: ENSG00000255916
Gene Name: RP13-895J2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-462
0.031
1
RP11-540A21.2
hsa-miR-125a-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500698
Biotype: lincRNA
Gene id: ENSG00000245522
Gene Name: RP11-540A21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1837-1856
0.020
1
7mer
1998-2019
0.006
3
6mer
2057-2075
0.004
2
RP5-1021I20.5
hsa-miR-125a-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555916
Biotype: antisense
Gene id: ENSG00000258891
Gene Name: RP5-1021I20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3100-3113
0.031
7
CTC-523E23.6
hsa-miR-125a-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595783
Biotype: lincRNA
Gene id: ENSG00000269037
Gene Name: CTC-523E23.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1226-1246
0.019
0
7mer
904-923
0.009
1
6mer
1162-1177
0.003
1
LINC01141
hsa-miR-125a-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426428
Biotype: lincRNA
Gene id: ENSG00000236963
Gene Name: LINC01141
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2666-2687
0.025
0
9mer
2432-2446
0.006
1
XLOC_006112
hsa-miR-125a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013455
Biotype: transcript isomorph
Gene id: XLOC_006112
Gene Name: XLOC_006112
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1031-1046
0.014
0
8mer
820-835
0.014
0
6mer
955-977
0.003
0
KIAA0196-AS1
hsa-miR-125a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519140
Biotype: antisense
Gene id: ENSG00000253167
Gene Name: KIAA0196-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
111-136
0.031
8
CTC-529P8.1
hsa-miR-125a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507373
Biotype: lincRNA
Gene id: ENSG00000250072
Gene Name: CTC-529P8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-44
0.031
4
CTD-2293H3.1
hsa-miR-125a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588369
Biotype: sense_intronic
Gene id: ENSG00000267672
Gene Name: CTD-2293H3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1091-1115
0.010
0
7mer
1132-1156
0.008
1
7mer
345-369
0.008
0
6mer
663-677
0.005
3
HNF1A-AS1
hsa-miR-125a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539163
Biotype: retained_intron
Gene id: ENSG00000241388
Gene Name: HNF1A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
397-417
0.016
0
7mer
217-241
0.009
1
6mer
713-724
0.002
1
6mer
1250-1275
0.002
0
6mer
1811-1826
0.001
0
LINC00846
hsa-miR-125a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000334165
Biotype: lincRNA
Gene id: ENSG00000186842
Gene Name: LINC00846
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-174
0.023
1
6mer
1051-1075
0.004
0
6mer
1413-1432
0.003
0
AE000662.92
hsa-miR-125a-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557595
Biotype: lincRNA
Gene id: ENSG00000259003
Gene Name: AE000662.92
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-154
0.031
2
AC034110.1
hsa-miR-125a-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000611889
Biotype: lincRNA
Gene id: ENSG00000276397
Gene Name: AC034110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-526
0.022
0
6mer
39-62
0.006
3
6mer
454-478
0.003
3
GACAT2
hsa-miR-125a-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579368
Biotype: antisense
Gene id: ENSG00000265962
Gene Name: GACAT2
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
276-298
0.019
1
7mer
761-774
0.011
1
XLOC_009661
hsa-miR-125a-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021063
Biotype: transcript isomorph
Gene id: XLOC_009661
Gene Name: XLOC_009661
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
733-756
0.016
2
8mer
246-265
0.011
1
6mer
360-380
0.004
1
RP11-517O13.3
hsa-miR-125a-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556390
Biotype: antisense
Gene id: ENSG00000258658
Gene Name: RP11-517O13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-372
0.031
1
XLOC_010800
hsa-miR-125a-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022471
Biotype: transcript isomorph
Gene id: XLOC_010800
Gene Name: XLOC_010800
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-333
0.023
1
7mer
408-431
0.008
0
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