LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
RP11-426C22.5
hsa-miR-125a-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000620513
Biotype: lincRNA
Gene id: ENSG00000260517
Gene Name: RP11-426C22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1560-1579
0.018
0
7mer
853-872
0.006
0
7mer
893-913
0.002
0
6mer
1657-1677
0.002
0
7mer
866-889
0.002
0
6mer
1275-1295
0.001
0
ZNF571-AS1
hsa-miR-125a-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585578
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-277
0.017
1
7mer
509-531
0.015
5
DNM3OS
hsa-miR-125a-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038397.2
Biotype: antisense
Gene id: NR_038397.2 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7462-7482
0.012
4
7mer
308-330
0.010
0
9mer
1961-1985
0.010
11
RP11-626G11.5
hsa-miR-125a-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567047
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-99
0.032
4
RP11-626G11.5
hsa-miR-125a-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568971
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-99
0.032
4
LINC00466
hsa-miR-125a-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455304
Biotype: lincRNA
Gene id: ENSG00000224209
Gene Name: LINC00466
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
628-648
0.017
7
7mer
370-387
0.015
8
RP11-208N14.4
hsa-miR-125a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000356133
Biotype: antisense
Gene id: ENSG00000198491
Gene Name: RP11-208N14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
697-715
0.023
7
6mer
370-397
0.008
7
CTD-2199O4.6
hsa-miR-125a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607861
Biotype: lincRNA
Gene id: ENSG00000272417
Gene Name: CTD-2199O4.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-305
0.025
1
6mer
302-317
0.007
1
RP11-40A13.1
hsa-miR-125a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584688
Biotype: antisense
Gene id: ENSG00000266535
Gene Name: RP11-40A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
50-62
0.016
8
6mer
191-212
0.015
10
CTD-2540L5.6
hsa-miR-125a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500016
Biotype: lincRNA
Gene id: ENSG00000245466
Gene Name: CTD-2540L5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2889-2908
0.025
8
6mer
219-244
0.004
Not Conserved
6mer
2408-2433
0.002
0
RP11-392E22.12
hsa-miR-125a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000562942
Biotype: processed_transcript
Gene id: ENSG00000273036
Gene Name: RP11-392E22.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
756-771
0.015
1
6mer
14-35
0.006
0
6mer
223-248
0.005
0
6mer
291-313
0.004
0
RP6-191P20.4
hsa-miR-125a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000430140
Biotype: antisense
Gene id: ENSG00000236064
Gene Name: RP6-191P20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1946-1968
0.026
4
6mer
1772-1792
0.003
0
6mer
1541-1558
0.003
1
RP11-800A3.3
hsa-miR-125a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000541254
Biotype: lincRNA
Gene id: ENSG00000256568
Gene Name: RP11-800A3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-558
0.031
1
AC064865.1
hsa-miR-125a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454965
Biotype: lincRNA
Gene id: ENSG00000235435
Gene Name: AC064865.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-293
0.031
0
MYHAS
hsa-miR-125a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587182
Biotype: antisense
Gene id: ENSG00000272975
Gene Name: MYHAS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2252-2272
0.021
6
7mer
846-869
0.005
4
7mer
2227-2251
0.003
0
6mer
699-714
0.003
4
HAS2-AS1
hsa-miR-125a-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520043
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-270
0.028
1
6mer
236-255
0.004
1
POLR2J4
hsa-miR-125a-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000427076
Biotype: processed_transcript
Gene id: ENSG00000214783
Gene Name: POLR2J4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-243
0.018
1
8mer
1201-1224
0.009
0
6mer
5513-5530
0.002
3
6mer
4953-4977
0.001
0
6mer
5375-5398
0.001
3
6mer
3099-3114
0.001
0
6mer
5330-5353
0.001
2
RP11-626G11.5
hsa-miR-125a-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576433
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
190-207
0.031
4
RP11-267C16.1
hsa-miR-125a-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578152
Biotype: lincRNA
Gene id: ENSG00000227115
Gene Name: RP11-267C16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-494
0.031
1
RP11-666A8.9
hsa-miR-125a-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588104
Biotype: antisense
Gene id: ENSG00000267078
Gene Name: RP11-666A8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
758-776
0.014
7
7mer
15-31
0.013
0
6mer
1351-1366
0.003
1
7mer
543-569
0.002
0
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