LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125a-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
MIR7515HG
hsa-miR-125a-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593269
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
108-133
0.023
1
6mer
849-875
0.007
2
6mer
773-797
0.003
0
AC003665.1
hsa-miR-125a-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433001
Biotype: antisense
Gene id: ENSG00000234494
Gene Name: AC003665.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
753-773
0.032
0
RP11-728E14.3
hsa-miR-125a-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577309
Biotype: lincRNA
Gene id: ENSG00000265043
Gene Name: RP11-728E14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3499-3513
0.020
1
6mer
3576-3587
0.006
Not Conserved
6mer
1550-1565
0.004
1
6mer
1901-1917
0.002
0
RP3-399L15.1
hsa-miR-125a-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000446358
Biotype: lincRNA
Gene id: ENSG00000232395
Gene Name: RP3-399L15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
274-295
0.032
1
ZNF337-AS1
hsa-miR-125a-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000414393
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
508-531
0.027
1
8mer+mismatch
167-190
0.003
1
6mer
1013-1027
0.002
1
CTA-929C8.9
hsa-miR-125a-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12603-12619
0.005
1
7mer
1604-1630
0.003
1
7mer
13474-13493
0.003
1
7mer
4777-4803
0.003
1
6mer
1093-1103
0.002
1
7mer
2883-2903
0.002
Not Conserved
7mer
16697-16718
0.002
0
6mer
557-572
0.002
1
7mer
1748-1767
0.002
1
6mer
11564-11577
0.002
0
7mer
13604-13627
0.001
0
6mer
6607-6616
0.001
0
6mer
16041-16060
0.001
0
6mer
2367-2386
0.001
0
6mer
19186-19201
0.001
0
6mer
22968-22990
0.001
0
6mer
17764-17777
0.001
1
AC003958.2
hsa-miR-125a-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000432258
Biotype: antisense
Gene id: ENSG00000234859
Gene Name: AC003958.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-193
0.019
1
6mer
284-300
0.003
5
6mer
621-646
0.003
1
6mer
442-458
0.003
2
7mer
1956-1980
0.002
1
6mer
690-708
0.002
2
7mer
1211-1229
0.001
0
RP11-260E18.1
hsa-miR-125a-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499131
Biotype: antisense
Gene id: ENSG00000246214
Gene Name: RP11-260E18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
47-68
0.013
8
7mer
429-454
0.010
4
6mer
156-177
0.006
4
6mer
945-964
0.004
1
RP11-379K22.2
hsa-miR-125a-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558208
Biotype: antisense
Gene id: ENSG00000259175
Gene Name: RP11-379K22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2151-2178
0.017
2
8mer
2200-2220
0.009
1
7mer
1793-1816
0.005
0
6mer
1084-1102
0.001
1
RP11-95D17.1
hsa-miR-125a-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602458
Biotype: lincRNA
Gene id: ENSG00000269973
Gene Name: RP11-95D17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-143
0.014
0
7mer
2810-2837
0.008
0
7mer
1306-1316
0.005
0
6mer
2573-2597
0.003
0
6mer
1810-1829
0.001
2
6mer
2637-2650
0.001
0
XLOC_011492
hsa-miR-125a-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023690
Biotype: transcript isomorph
Gene id: XLOC_011492
Gene Name: XLOC_011492
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
613-637
0.032
2
RP11-474D1.2
hsa-miR-125a-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535487
Biotype: lincRNA
Gene id: ENSG00000256906
Gene Name: RP11-474D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-316
0.017
1
7mer
1060-1078
0.007
1
8mer+wobble
527-547
0.004
1
6mer
814-832
0.003
0
6mer
950-968
0.001
Not Conserved
XLOC_010463
hsa-miR-125a-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021867
Biotype: transcript isomorph
Gene id: XLOC_010463
Gene Name: XLOC_010463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2425-2450
0.019
1
8mer
7926-7949
0.010
2
6mer
9100-9109
0.002
0
6mer
9624-9642
0.001
0
6mer
9756-9774
0.000
1
RP11-266K4.13
hsa-miR-125a-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
956-979
0.032
1
ZNF571-AS1
hsa-miR-125a-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_038247.1
Biotype: sense
Gene id: NR_038247.1 (gene)
Gene Name: ZNF571-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-275
0.017
1
7mer
507-529
0.015
5
FAM138F
hsa-miR-125a-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586011
Biotype: lincRNA
Gene id: ENSG00000233630
Gene Name: FAM138F
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
952-968
0.030
2
6mer
759-775
0.002
0
RP11-337C18.8
hsa-miR-125a-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606757
Biotype: antisense
Gene id: ENSG00000237188
Gene Name: RP11-337C18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-421
0.032
2
XLOC_013189
hsa-miR-125a-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026758
Biotype: transcript isomorph
Gene id: XLOC_013189
Gene Name: XLOC_013189
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
851-867
0.029
2
6mer
658-674
0.003
0
FAM138F
hsa-miR-125a-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_026820.1
Biotype: lincRNA
Gene id: NR_026820.1 (gene)
Gene Name: FAM138F
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
852-868
0.029
2
6mer
659-675
0.003
0
FAM138F
hsa-miR-125a-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000448235
Biotype: lincRNA
Gene id: ENSG00000233630
Gene Name: FAM138F
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-925
0.029
2
6mer
716-732
0.003
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept