LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009723
hsa-miR-125a-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020391
Biotype: transcript isomorph
Gene id: XLOC_009723
Gene Name: XLOC_009723
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1312-1335
0.033
1
RP11-160H22.5
hsa-miR-125a-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000454467
Biotype: lincRNA
Gene id: ENSG00000227373
Gene Name: RP11-160H22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
264-281
0.024
1
7mer
141-164
0.008
0
XLOC_000529
hsa-miR-125a-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001247
Biotype: transcript isomorph
Gene id: XLOC_000529
Gene Name: XLOC_000529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4309-4322
0.023
1
7mer
4005-4029
0.007
1
7mer
2381-2395
0.003
0
XLOC_010287
hsa-miR-125a-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021524
Biotype: transcript isomorph
Gene id: XLOC_010287
Gene Name: XLOC_010287
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
654-673
0.013
2
6mer
645-665
0.011
1
6mer
465-482
0.009
1
SC22CB-109E1.1
hsa-miR-125a-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-427
0.020
0
7mer
9691-9715
0.007
0
7mer
6386-6400
0.004
1
6mer
2860-2885
0.001
0
AC003665.1
hsa-miR-125a-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000411573
Biotype: antisense
Gene id: ENSG00000234494
Gene Name: AC003665.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1599-1619
0.031
0
6mer
784-807
0.002
1
XLOC_000913
hsa-miR-125a-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001577
Biotype: transcript isomorph
Gene id: XLOC_000913
Gene Name: XLOC_000913
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-89
0.032
3
RP11-509A17.3
hsa-miR-125a-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557528
Biotype: lincRNA
Gene id: ENSG00000258654
Gene Name: RP11-509A17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-92
0.032
1
XLOC_001035
hsa-miR-125a-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002485
Biotype: transcript isomorph
Gene id: XLOC_001035
Gene Name: XLOC_001035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1083-1104
0.014
1
8mer
471-488
0.006
1
6mer
99-119
0.005
2
7mer
109-134
0.005
1
6mer
1032-1053
0.002
1
6mer
570-589
0.001
1
RP11-446N19.1
hsa-miR-125a-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000607353
Biotype: lincRNA
Gene id: ENSG00000272369
Gene Name: RP11-446N19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-224
0.028
1
6mer
71-98
0.004
2
XLOC_004566
hsa-miR-125a-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010102
Biotype: transcript isomorph
Gene id: XLOC_004566
Gene Name: XLOC_004566
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
420-434
0.032
1
SHANK3
hsa-miR-125a-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000262795
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6851-6867
0.013
6
7mer
609-627
0.005
1
6mer
6531-6554
0.005
9
6mer
782-806
0.003
5
6mer
501-527
0.003
4
6mer
6235-6254
0.002
Not Conserved
6mer
4088-4106
0.001
7
6mer
3837-3858
0.001
3
CTC-513N18.7
hsa-miR-125a-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595094
Biotype: lincRNA
Gene id: ENSG00000269110
Gene Name: CTC-513N18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
131-155
0.019
1
8mer
222-247
0.013
0
CTA-292E10.9
hsa-miR-125a-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2068-2089
0.005
6
6mer
11742-11763
0.004
14
7mer
952-978
0.003
0
7mer
19657-19679
0.003
0
7mer
18260-18278
0.003
0
7mer
20035-20057
0.003
0
7mer
13181-13205
0.003
1
7mer
18829-18843
0.003
2
7mer
18932-18956
0.002
0
6mer
5612-5630
0.001
1
6mer
8910-8926
0.001
0
7mer
5226-5250
0.001
0
6mer
18092-18113
0.001
1
LINC01141
hsa-miR-125a-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418743
Biotype: lincRNA
Gene id: ENSG00000236963
Gene Name: LINC01141
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-522
0.025
0
9mer
390-404
0.007
1
RP11-160H22.5
hsa-miR-125a-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426899
Biotype: lincRNA
Gene id: ENSG00000227373
Gene Name: RP11-160H22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
571-588
0.025
1
7mer
448-471
0.007
0
AC004535.2
hsa-miR-125a-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000422697
Biotype: lincRNA
Gene id: ENSG00000236414
Gene Name: AC004535.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-395
0.032
0
MEF2C-AS1
hsa-miR-125a-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511876
Biotype: antisense
Gene id: ENSG00000248309
Gene Name: MEF2C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-262
0.021
11
6mer
40-52
0.011
12
C11orf72
hsa-miR-125a-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000333139
Biotype: lincRNA
Gene id: ENSG00000184224
Gene Name: C11orf72
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1826-1851
0.029
0
7mer
1616-1641
0.003
0
RBMS3-AS2
hsa-miR-125a-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601343
Biotype: antisense
Gene id: ENSG00000203506
Gene Name: RBMS3-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
736-757
0.032
1
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