LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
LINC00173
hsa-miR-125a-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000480237
Biotype: lincRNA
Gene id: ENSG00000196668
Gene Name: LINC00173
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
563-585
0.029
8
6mer
9-27
0.003
2
6mer
207-222
0.001
0
RP11-347H15.4
hsa-miR-125a-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525654
Biotype: lincRNA
Gene id: ENSG00000254518
Gene Name: RP11-347H15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-498
0.033
0
XLOC_004017
hsa-miR-125a-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008530
Biotype: transcript isomorph
Gene id: XLOC_004017
Gene Name: XLOC_004017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
176-193
0.033
1
MIR646HG
hsa-miR-125a-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000432910
Biotype: lincRNA
Gene id: ENSG00000228340
Gene Name: MIR646HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1491-1517
0.015
2
7mer
830-848
0.008
0
7mer
1801-1822
0.008
1
8mer+wobble
434-455
0.002
1
TCL6
hsa-miR-125a-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000484207
Biotype: retained_intron
Gene id: ENSG00000187621
Gene Name: TCL6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2707-2732
0.015
1
7mer
259-284
0.008
1
6mer
28-49
0.004
1
6mer
307-323
0.003
1
6mer
833-854
0.002
1
6mer
885-903
0.000
Not Conserved
RP11-897M7.4
hsa-miR-125a-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618927
Biotype: lincRNA
Gene id: ENSG00000275232
Gene Name: RP11-897M7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-254
0.024
1
6mer
59-83
0.009
1
NEBL-AS1
hsa-miR-125a-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000439097
Biotype: antisense
Gene id: ENSG00000231920
Gene Name: NEBL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
592-608
0.029
1
6mer
428-455
0.004
1
AC022431.3
hsa-miR-125a-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000431789
Biotype: sense_intronic
Gene id: ENSG00000234553
Gene Name: AC022431.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-490
0.027
0
7mer
217-241
0.006
0
RGPD4-AS1
hsa-miR-125a-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417284
Biotype: lincRNA
Gene id: ENSG00000230651
Gene Name: RGPD4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-113
0.020
1
9mer
7-30
0.013
1
CTD-2659N19.9
hsa-miR-125a-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590065
Biotype: lincRNA
Gene id: ENSG00000267212
Gene Name: CTD-2659N19.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6-30
0.033
2
XLOC_002193
hsa-miR-125a-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003331
Biotype: transcript isomorph
Gene id: XLOC_002193
Gene Name: XLOC_002193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-84
0.033
1
FAM66B
hsa-miR-125a-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606573
Biotype: lincRNA
Gene id: ENSG00000215374
Gene Name: FAM66B
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
487-514
0.029
Not Conserved
6mer
1330-1351
0.002
0
6mer
1596-1614
0.001
Not Conserved
AC037445.1
hsa-miR-125a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000435892
Biotype: antisense
Gene id: ENSG00000233635
Gene Name: AC037445.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-79
0.033
2
LINC00277
hsa-miR-125a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000415504
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-389
0.018
2
8mer
2129-2155
0.012
1
6mer
1599-1614
0.003
1
RP11-291B21.2
hsa-miR-125a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544591
Biotype: lincRNA
Gene id: ENSG00000256039
Gene Name: RP11-291B21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
750-773
0.018
2
8mer
263-282
0.011
1
6mer
377-397
0.004
1
AC144568.2
hsa-miR-125a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522481
Biotype: lincRNA
Gene id: ENSG00000253896
Gene Name: AC144568.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
820-845
0.020
1
7mer
141-158
0.011
1
6mer
184-207
0.002
Not Conserved
CTC-459F4.3
hsa-miR-125a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000621046
Biotype: sense_intronic
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-368
0.022
0
6mer
24-43
0.010
0
LINC00277
hsa-miR-125a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000435479
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-276
0.024
2
6mer
809-824
0.004
1
6mer
23-45
0.004
1
RP4-671O14.7
hsa-miR-125a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14407-14427
0.010
0
8mer
3751-3768
0.005
1
6mer
68-80
0.004
1
7mer
8543-8567
0.002
0
7mer
14742-14761
0.002
0
7mer
14105-14129
0.002
1
7mer
14706-14727
0.001
1
6mer
12035-12057
0.001
1
7mer
12584-12606
0.001
1
6mer
9280-9291
0.001
0
7mer
7190-7201
0.001
0
6mer
4173-4196
0.001
0
XLOC_005101
hsa-miR-125a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010578
Biotype: transcript isomorph
Gene id: XLOC_005101
Gene Name: XLOC_005101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-276
0.033
0
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