LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
MIR7515HG
hsa-miR-125a-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589597
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
86-103
0.021
10
8mer
717-739
0.013
Not Conserved
ENTPD1-AS1
hsa-miR-125a-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449197
Biotype: antisense
Gene id: ENSG00000226688
Gene Name: ENTPD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-429
0.034
0
RP4-781K5.6
hsa-miR-125a-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442382
Biotype: lincRNA
Gene id: ENSG00000230628
Gene Name: RP4-781K5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
577-602
0.025
1
7mer
2999-3015
0.008
1
6mer
1093-1107
0.001
Not Conserved
XLOC_003440
hsa-miR-125a-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2614-2637
0.009
1
7mer
2246-2263
0.008
1
6mer
3090-3113
0.007
1
6mer
2450-2465
0.005
1
6mer
2670-2685
0.003
1
6mer
740-762
0.002
0
RP11-265N7.2
hsa-miR-125a-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560259
Biotype: lincRNA
Gene id: ENSG00000259423
Gene Name: RP11-265N7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-67
0.019
2
7mer
100-114
0.014
3
RP11-236P24.3
hsa-miR-125a-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433646
Biotype: lincRNA
Gene id: ENSG00000234019
Gene Name: RP11-236P24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
230-249
0.029
4
6mer
27-41
0.004
1
RP11-159D12.2
hsa-miR-125a-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577267
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4026-4038
0.016
2
7mer
3445-3467
0.013
4
6mer
3739-3760
0.003
0
6mer
1700-1716
0.002
3
LINC00277
hsa-miR-125a-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558922
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-480
0.019
2
8mer
1627-1653
0.012
1
6mer
1097-1112
0.002
1
LINC00694
hsa-miR-125a-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000416124
Biotype: lincRNA
Gene id: ENSG00000225873
Gene Name: LINC00694
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-255
0.026
6
6mer
578-599
0.007
4
6mer
406-422
0.001
0
XLOC_009831
hsa-miR-125a-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020514
Biotype: transcript isomorph
Gene id: XLOC_009831
Gene Name: XLOC_009831
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-471
0.020
1
8mer
1872-1893
0.005
1
7mer
1733-1756
0.004
1
6mer
4682-4700
0.003
1
6mer
1937-1953
0.001
0
CTB-179K24.3
hsa-miR-125a-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586556
Biotype: antisense
Gene id: ENSG00000267348
Gene Name: CTB-179K24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
588-612
0.030
4
6mer
292-313
0.004
0
AC007461.2
hsa-miR-125a-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000419257
Biotype: lincRNA
Gene id: ENSG00000226101
Gene Name: AC007461.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1927-1940
0.020
2
8mer
1022-1037
0.011
1
6mer
1585-1606
0.003
1
RP11-1057B8.2
hsa-miR-125a-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505083
Biotype: lincRNA
Gene id: ENSG00000251218
Gene Name: RP11-1057B8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-28
0.022
2
8mer
56-68
0.011
1
AC009014.3
hsa-miR-125a-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607574
Biotype: lincRNA
Gene id: ENSG00000271824
Gene Name: AC009014.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-234
0.028
2
6mer
531-551
0.003
1
6mer
1422-1441
0.002
1
RP11-69H14.6
hsa-miR-125a-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560969
Biotype: sense_overlapping
Gene id: ENSG00000259176
Gene Name: RP11-69H14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
242-253
0.033
3
RP11-218E20.5
hsa-miR-125a-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557343
Biotype: antisense
Gene id: ENSG00000258745
Gene Name: RP11-218E20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-207
0.031
10
6mer
174-194
0.002
1
XLOC_011809
hsa-miR-125a-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024489
Biotype: transcript isomorph
Gene id: XLOC_011809
Gene Name: XLOC_011809
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
941-954
0.011
0
9mer
648-667
0.009
1
7mer
1878-1903
0.007
1
6mer
95-118
0.003
1
7mer
1961-1977
0.001
0
6mer
1376-1397
0.001
0
6mer
1461-1483
0.001
1
RP11-427L15.2
hsa-miR-125a-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000613826
Biotype: sense_intronic
Gene id: ENSG00000277687
Gene Name: RP11-427L15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
943-957
0.033
4
RP11-160H12.2
hsa-miR-125a-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533101
Biotype: antisense
Gene id: ENSG00000255311
Gene Name: RP11-160H12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
509-525
0.033
0
RP11-544I20.2
hsa-miR-125a-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000359491
Biotype: antisense
Gene id: ENSG00000214770
Gene Name: RP11-544I20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-434
0.024
0
7mer
251-275
0.007
0
6mer
1542-1563
0.002
0
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