LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
RP11-67H2.1
hsa-miR-125a-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518558
Biotype: lincRNA
Gene id: ENSG00000253207
Gene Name: RP11-67H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-248
0.031
1
6mer
172-194
0.004
0
RP11-411K7.1
hsa-miR-125a-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431554
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-262
0.017
2
8mer
98-117
0.014
0
6mer
108-125
0.004
3
XLOC_007614
hsa-miR-125a-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016231
Biotype: transcript isomorph
Gene id: XLOC_007614
Gene Name: XLOC_007614
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1946-1970
0.012
1
7mer
2041-2063
0.008
0
7mer
884-908
0.005
1
8mer
1265-1286
0.004
Not Conserved
6mer
289-311
0.003
2
7mer
406-431
0.001
0
ZBTB20-AS1
hsa-miR-125a-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475939
Biotype: antisense
Gene id: ENSG00000241560
Gene Name: ZBTB20-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-46
0.034
14
XLOC_008274
hsa-miR-125a-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017605
Biotype: transcript isomorph
Gene id: XLOC_008274
Gene Name: XLOC_008274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1480-1505
0.024
0
7mer
4178-4201
0.007
0
6mer
1920-1942
0.002
1
6mer
2145-2164
0.001
0
XLOC_000619
hsa-miR-125a-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001330
Biotype: transcript isomorph
Gene id: XLOC_000619
Gene Name: XLOC_000619
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-100
0.034
0
AJ239322.3
hsa-miR-125a-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421696
Biotype: lincRNA
Gene id: ENSG00000244337
Gene Name: AJ239322.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-71
0.028
4
6mer
162-184
0.006
0
RP11-706O15.3
hsa-miR-125a-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000456563
Biotype: lincRNA
Gene id: ENSG00000234449
Gene Name: RP11-706O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-427
0.024
1
7mer
101-112
0.010
1
TTTY15
hsa-miR-125a-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000457658
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
305-325
0.034
0
RP11-678G14.4
hsa-miR-125a-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594927
Biotype: lincRNA
Gene id: ENSG00000268240
Gene Name: RP11-678G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2303-2322
0.020
0
7mer
788-813
0.009
0
7mer
1310-1334
0.003
0
7mer
1481-1502
0.003
0
TPTEP1
hsa-miR-125a-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426585
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5326-5350
0.016
1
7mer
5426-5445
0.008
0
7mer
1836-1862
0.003
0
7mer
2291-2317
0.003
0
7mer
3938-3952
0.002
0
7mer
1462-1476
0.002
Not Conserved
6mer
4065-4088
0.001
0
LINC00277
hsa-miR-125a-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000440444
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-548
0.015
2
8mer
2413-2439
0.012
1
6mer
31-53
0.004
1
6mer
1883-1898
0.003
1
DNAJC3-AS1
hsa-miR-125a-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000499499
Biotype: lincRNA
Gene id: ENSG00000247400
Gene Name: DNAJC3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2082-2108
0.025
1
6mer
641-660
0.006
2
7mer
1798-1822
0.003
1
RP11-481J2.2
hsa-miR-125a-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562322
Biotype: lincRNA
Gene id: ENSG00000260186
Gene Name: RP11-481J2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
392-407
0.034
0
XLOC_006898
hsa-miR-125a-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014543
Biotype: transcript isomorph
Gene id: XLOC_006898
Gene Name: XLOC_006898
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2547-2569
0.034
1
RP11-141M1.1
hsa-miR-125a-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000443576
Biotype: lincRNA
Gene id: ENSG00000227911
Gene Name: RP11-141M1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-293
0.034
1
RP11-774O3.3
hsa-miR-125a-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505448
Biotype: lincRNA
Gene id: ENSG00000251615
Gene Name: RP11-774O3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-391
0.009
1
8mer
1740-1752
0.005
0
8mer
2102-2117
0.004
0
6mer
700-717
0.003
1
8mer
2000-2012
0.003
0
6mer
341-365
0.002
0
8mer
1587-1600
0.002
1
8mer
1949-1961
0.002
0
8mer
2051-2063
0.002
0
8mer
1536-1548
0.001
0
7mer
1689-1710
0.001
Not Conserved
XLOC_013943
hsa-miR-125a-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029021
Biotype: transcript isomorph
Gene id: XLOC_013943
Gene Name: XLOC_013943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-139
0.029
0
6mer
44-61
0.005
0
RP11-844P9.2
hsa-miR-125a-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508056
Biotype: lincRNA
Gene id: ENSG00000248596
Gene Name: RP11-844P9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
434-449
0.009
1
9mer
1542-1566
0.008
0
6mer
78-94
0.008
0
6mer
1058-1085
0.005
1
6mer
258-269
0.003
0
CTD-2185K10.1
hsa-miR-125a-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000487624
Biotype: lincRNA
Gene id: ENSG00000243295
Gene Name: CTD-2185K10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
236-262
0.028
1
7mer
405-427
0.005
1
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