LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
RP11-15B24.5
hsa-miR-125a-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590903
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-48
0.035
6
RP11-15B24.5
hsa-miR-125a-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585454
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-48
0.035
6
LINC00928
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_027076.1
Biotype: lincRNA
Gene id: NR_027076.1 (gene)
Gene Name: LINC00928
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-185
0.020
4
7mer
826-846
0.009
4
6mer
718-729
0.004
2
6mer
850-872
0.002
0
RP11-15B24.5
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000588492
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-48
0.035
6
XLOC_002366
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005257
Biotype: transcript isomorph
Gene id: XLOC_002366
Gene Name: XLOC_002366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-91
0.035
1
AC003075.4
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419382
Biotype: antisense
Gene id: ENSG00000237773
Gene Name: AC003075.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
637-651
0.031
1
6mer
303-329
0.004
1
TMEM51-AS1
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000404665
Biotype: antisense
Gene id: ENSG00000175147
Gene Name: TMEM51-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-309
0.008
2
7mer
479-498
0.006
2
6mer
1889-1912
0.005
3
6mer
2200-2222
0.004
4
8mer
1055-1071
0.004
0
6mer
674-690
0.003
3
6mer
527-545
0.002
1
6mer
2141-2157
0.002
1
RP11-15B24.5
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590250
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-48
0.035
6
RP11-15B24.5
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000591117
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-48
0.035
6
LCMT1-AS2
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2153-2180
0.011
1
7mer
2097-2121
0.010
1
7mer
938-962
0.007
0
6mer
899-926
0.006
1
6mer
2002-2019
0.001
Not Conserved
AC005154.6
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584023
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
365-388
0.012
0
6mer
385-407
0.011
0
6mer
393-413
0.011
0
XLOC_014411
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029736
Biotype: transcript isomorph
Gene id: XLOC_014411
Gene Name: XLOC_014411
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2414-2437
0.035
0
XLOC_008697
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018873
Biotype: transcript isomorph
Gene id: XLOC_008697
Gene Name: XLOC_008697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
340-358
0.031
1
6mer
443-462
0.004
0
XLOC_003100
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006498
Biotype: transcript isomorph
Gene id: XLOC_003100
Gene Name: XLOC_003100
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2395-2418
0.009
0
7mer
949-974
0.009
0
7mer
421-447
0.005
0
9mer
3140-3165
0.004
0
6mer
6347-6371
0.003
0
7mer
5399-5412
0.003
1
6mer
4577-4595
0.001
1
PTPRD-AS1
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000447950
Biotype: lincRNA
Gene id: ENSG00000225706
Gene Name: PTPRD-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
693-717
0.028
Not Conserved
7mer
1490-1512
0.007
0
XLOC_006126
hsa-miR-125a-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013478
Biotype: transcript isomorph
Gene id: XLOC_006126
Gene Name: XLOC_006126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
483-506
0.018
0
6mer
713-725
0.017
0
RP11-93K22.6
hsa-miR-125a-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000509201
Biotype: antisense
Gene id: ENSG00000250643
Gene Name: RP11-93K22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-153
0.035
1
RP4-753M9.1
hsa-miR-125a-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424580
Biotype: sense_intronic
Gene id: ENSG00000230922
Gene Name: RP4-753M9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
67-87
0.013
8
8mer
370-393
0.011
Not Conserved
6mer
1028-1042
0.003
2
6mer
1499-1525
0.003
1
6mer
1391-1417
0.002
1
6mer
1556-1573
0.002
0
AC037445.1
hsa-miR-125a-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581421
Biotype: antisense
Gene id: ENSG00000233635
Gene Name: AC037445.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-78
0.034
2
LINC00343
hsa-miR-125a-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000599264
Biotype: lincRNA
Gene id: ENSG00000226620
Gene Name: LINC00343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-109
0.028
1
6mer
104-126
0.006
1
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