LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
RP11-34P13.13
hsa-miR-125a-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484859
Biotype: antisense
Gene id: ENSG00000241860
Gene Name: RP11-34P13.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
916-928
0.015
0
7mer
3283-3302
0.008
1
6mer
14-33
0.007
0
7mer
3954-3979
0.004
0
LINC01105
hsa-miR-125a-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000625018
Biotype: TEC
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
545-564
0.010
1
7mer
1946-1970
0.006
1
7mer
2788-2808
0.005
0
7mer
1680-1703
0.004
1
7mer
2412-2436
0.003
1
8mer
576-591
0.003
1
6mer
876-902
0.002
1
6mer
960-983
0.002
1
RP11-411K7.1
hsa-miR-125a-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000511369
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-286
0.018
2
8mer
122-141
0.014
0
6mer
132-149
0.004
3
XLOC_003789
hsa-miR-125a-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007413
Biotype: transcript isomorph
Gene id: XLOC_003789
Gene Name: XLOC_003789
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2640-2659
0.029
2
7mer
714-741
0.004
0
6mer
976-1002
0.002
1
6mer
1455-1476
0.001
1
CTD-2521M24.9
hsa-miR-125a-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594913
Biotype: lincRNA
Gene id: ENSG00000269640
Gene Name: CTD-2521M24.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
556-570
0.022
1
7mer
395-414
0.010
1
6mer
108-126
0.003
Not Conserved
RP5-905H7.8
hsa-miR-125a-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000418297
Biotype: lincRNA
Gene id: ENSG00000229301
Gene Name: RP5-905H7.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
468-492
0.021
0
7mer
425-451
0.014
0
XLOC_004924
hsa-miR-125a-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10692-10707
0.008
2
7mer
3686-3710
0.008
3
7mer
2379-2400
0.004
0
7mer
8092-8116
0.003
1
7mer
7051-7070
0.003
1
7mer
6295-6320
0.002
0
6mer
6485-6498
0.002
1
7mer
1490-1514
0.002
0
6mer
5642-5661
0.002
1
6mer
8530-8548
0.001
1
6mer
5055-5073
0.001
0
6mer
7314-7339
0.000
Not Conserved
RP11-73B2.4
hsa-miR-125a-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450077
Biotype: lincRNA
Gene id: ENSG00000232817
Gene Name: RP11-73B2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-61
0.021
0
7mer
78-104
0.014
0
RP11-15B24.5
hsa-miR-125a-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000457558
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-100
0.035
6
RP11-61L19.2
hsa-miR-125a-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000608162
Biotype: lincRNA
Gene id: ENSG00000273335
Gene Name: RP11-61L19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
138-160
0.035
2
RP11-758N13.1
hsa-miR-125a-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560363
Biotype: lincRNA
Gene id: ENSG00000259721
Gene Name: RP11-758N13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
59-84
0.035
9
HSPB2-C11orf52
hsa-miR-125a-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037651.1
Biotype: sense
Gene id: NR_037651.1 (gene)
Gene Name: HSPB2-C11orf52
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-273
0.025
8
7mer
300-319
0.008
6
7mer
877-899
0.002
Not Conserved
CTD-3051D23.1
hsa-miR-125a-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556430
Biotype: lincRNA
Gene id: ENSG00000258811
Gene Name: CTD-3051D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
720-746
0.018
1
6mer
371-396
0.007
1
8mer
2124-2141
0.005
0
7mer
1071-1088
0.005
1
RP11-67H2.1
hsa-miR-125a-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521500
Biotype: lincRNA
Gene id: ENSG00000253207
Gene Name: RP11-67H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1248-1272
0.028
1
6mer
301-326
0.004
2
6mer
1203-1218
0.003
0
RP11-1007O24.3
hsa-miR-125a-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562573
Biotype: lincRNA
Gene id: ENSG00000261423
Gene Name: RP11-1007O24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-141
0.032
1
6mer
391-409
0.004
1
ZNF337-AS1
hsa-miR-125a-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000439498
Biotype: antisense
Gene id: ENSG00000213742
Gene Name: ZNF337-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-283
0.035
1
XLOC_006324
hsa-miR-125a-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013664
Biotype: transcript isomorph
Gene id: XLOC_006324
Gene Name: XLOC_006324
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
348-372
0.014
0
6mer
180-206
0.013
0
6mer
113-130
0.008
0
RP11-263K19.4
hsa-miR-125a-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422665
Biotype: antisense
Gene id: ENSG00000231064
Gene Name: RP11-263K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-228
0.035
10
C21orf67
hsa-miR-125a-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000330551
Biotype: lincRNA
Gene id: ENSG00000183250
Gene Name: C21orf67
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
739-758
0.035
1
RP11-370A5.1
hsa-miR-125a-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579356
Biotype: antisense
Gene id: ENSG00000266850
Gene Name: RP11-370A5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-209
0.035
9
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