LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
FAM182B
hsa-miR-125a-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_026714.2
Biotype: sense
Gene id: NR_026714.2 (gene)
Gene Name: FAM182B
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
864-881
0.004
0
9mer
901-919
0.003
0
7mer
1903-1926
0.002
0
6mer
774-794
0.002
0
7mer
2875-2893
0.002
0
7mer
1353-1368
0.002
0
6mer
1066-1089
0.002
0
6mer
2930-2955
0.001
0
6mer
846-872
0.001
0
7mer
3659-3684
0.001
Not Conserved
7mer
3678-3699
0.001
0
6mer
975-992
0.001
0
6mer
3806-3823
0.001
0
7mer
3715-3730
0.001
0
6mer
1211-1231
0.001
0
7mer
2416-2431
0.001
0
6mer
737-751
0.001
0
6mer
1319-1343
0.001
0
6mer
3568-3586
0.001
0
6mer
2142-2165
0.001
0
6mer
1631-1647
0.001
0
6mer
2306-2330
0.001
0
6mer
1720-1746
0.001
0
6mer
2214-2238
0.001
0
6mer
2471-2487
0.001
0
6mer
1794-1809
0.001
0
6mer
3751-3776
0.001
0
6mer
2086-2109
0.001
0
6mer
2648-2662
0.000
0
6mer
2178-2202
0.000
0
6mer
1594-1609
0.000
0
6mer
2740-2760
0.000
0
6mer
1447-1471
0.000
Not Conserved
6mer
3697-3722
0.000
0
6mer
2538-2558
0.000
0
6mer
2776-2800
0.000
Not Conserved
6mer
1503-1520
0.000
0
6mer
1302-1327
0.000
0
6mer
1391-1410
0.000
Not Conserved
LINC01105
hsa-miR-125a-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000391666
Biotype: processed_transcript
Gene id: ENSG00000232044
Gene Name: LINC01105
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
531-550
0.010
1
7mer
1932-1956
0.006
1
7mer
2774-2794
0.005
0
7mer
1666-1689
0.004
1
7mer
2398-2422
0.004
1
8mer
562-577
0.003
1
6mer
946-969
0.002
1
6mer
862-888
0.002
1
XLOC_008899
hsa-miR-125a-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018995
Biotype: transcript isomorph
Gene id: XLOC_008899
Gene Name: XLOC_008899
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-147
0.036
0
C1QTNF3-AMACR
hsa-miR-125a-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_037951.1
Biotype: sense
Gene id: NR_037951.1 (gene)
Gene Name: C1QTNF3-AMACR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
717-734
0.016
1
8mer
1567-1589
0.015
0
6mer
55-78
0.004
Not Conserved
6mer
1248-1270
0.001
0
RP11-121C6.5
hsa-miR-125a-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000610448
Biotype: lincRNA
Gene id: ENSG00000276272
Gene Name: RP11-121C6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-29
0.036
0
CTD-2201E18.3
hsa-miR-125a-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503152
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-142
0.036
1
XLOC_004271
hsa-miR-125a-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010613
Biotype: transcript isomorph
Gene id: XLOC_004271
Gene Name: XLOC_004271
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4103-4125
0.035
0
6mer
436-451
0.001
Not Conserved
CTC-559E9.6
hsa-miR-125a-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589657
Biotype: antisense
Gene id: ENSG00000267419
Gene Name: CTC-559E9.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-549
0.036
0
LINC01332
hsa-miR-125a-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506612
Biotype: lincRNA
Gene id: ENSG00000250446
Gene Name: LINC01332
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-199
0.033
1
6mer
338-355
0.003
1
RP11-85G18.6
hsa-miR-125a-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000574842
Biotype: lincRNA
Gene id: ENSG00000262412
Gene Name: RP11-85G18.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
960-974
0.036
1
XLOC_010027
hsa-miR-125a-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020728
Biotype: transcript isomorph
Gene id: XLOC_010027
Gene Name: XLOC_010027
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-311
0.032
1
6mer
256-268
0.004
1
XLOC_000022
hsa-miR-125a-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000807
Biotype: transcript isomorph
Gene id: XLOC_000022
Gene Name: XLOC_000022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1669-1695
0.009
1
7mer
537-558
0.008
0
7mer
151-174
0.008
0
6mer
4077-4095
0.003
1
7mer
797-813
0.003
0
6mer
3999-4024
0.002
1
8mer
2943-2967
0.001
0
6mer
3469-3490
0.001
0
RP1-81P11.1
hsa-miR-125a-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552060
Biotype: lincRNA
Gene id: ENSG00000257677
Gene Name: RP1-81P11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-79
0.030
1
6mer
18-39
0.006
1
CTD-2017D11.1
hsa-miR-125a-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1933-1953
0.021
1
6mer
1117-1128
0.008
1
6mer
794-818
0.007
1
RP11-65I12.1
hsa-miR-125a-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000613966
Biotype: antisense
Gene id: ENSG00000274877
Gene Name: RP11-65I12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3053-3074
0.020
3
9mer
1119-1144
0.014
2
6mer
753-771
0.002
1
CTC-523E23.4
hsa-miR-125a-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587150
Biotype: lincRNA
Gene id: ENSG00000267767
Gene Name: CTC-523E23.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
41-63
0.029
2
6mer
502-517
0.007
1
AC003973.4
hsa-miR-125a-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-174
0.025
0
6mer
505-523
0.011
0
XLOC_010185
hsa-miR-125a-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020906
Biotype: transcript isomorph
Gene id: XLOC_010185
Gene Name: XLOC_010185
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-57
0.036
5
RP11-452L6.8
hsa-miR-125a-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000615068
Biotype: antisense
Gene id: ENSG00000277543
Gene Name: RP11-452L6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-233
0.036
6
TCL6
hsa-miR-125a-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000486671
Biotype: retained_intron
Gene id: ENSG00000187621
Gene Name: TCL6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2238-2263
0.022
0
8mer
1101-1126
0.014
1
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