LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
MEG3
hsa-miR-125a-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000522771
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
437-450
0.012
1
6mer
6532-6554
0.008
6
6mer
6689-6705
0.007
6
7mer
2977-2999
0.004
3
6mer
5550-5566
0.002
3
6mer
5871-5890
0.002
Not Conserved
6mer
2442-2465
0.001
1
6mer
5036-5061
0.001
1
RP11-15B24.5
hsa-miR-125a-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000591257
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-48
0.037
6
RP11-15B24.5
hsa-miR-125a-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590298
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-48
0.037
6
XLOC_009920
hsa-miR-125a-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020239
Biotype: transcript isomorph
Gene id: XLOC_009920
Gene Name: XLOC_009920
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-122
0.012
1
7mer
2597-2608
0.007
0
7mer
2773-2788
0.006
0
7mer
2729-2748
0.005
0
6mer
125-136
0.004
1
7mer
2407-2427
0.004
1
RP11-15B24.5
hsa-miR-125a-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586214
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-48
0.037
6
RP11-15B24.5
hsa-miR-125a-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590667
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-48
0.037
6
RP11-15B24.5
hsa-miR-125a-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000588368
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-47
0.037
6
RP11-58E21.7
hsa-miR-125a-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556019
Biotype: lincRNA
Gene id: ENSG00000273307
Gene Name: RP11-58E21.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-121
0.037
0
RP11-706O15.3
hsa-miR-125a-3p
0.834
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000381108
Biotype: lincRNA
Gene id: ENSG00000234449
Gene Name: RP11-706O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1741-1766
0.025
1
7mer
1440-1451
0.008
1
6mer
547-563
0.004
1
CTC-360P9.1
hsa-miR-125a-3p
0.833
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592270
Biotype: lincRNA
Gene id: ENSG00000267012
Gene Name: CTC-360P9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-161
0.030
7
7mer
324-346
0.007
1
XLOC_002206
hsa-miR-125a-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004332
Biotype: transcript isomorph
Gene id: XLOC_002206
Gene Name: XLOC_002206
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-107
0.026
1
7mer
111-126
0.011
1
RP11-370A5.1
hsa-miR-125a-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581274
Biotype: antisense
Gene id: ENSG00000266850
Gene Name: RP11-370A5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-207
0.037
9
RP11-73M7.6
hsa-miR-125a-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623786
Biotype: antisense
Gene id: ENSG00000235790
Gene Name: RP11-73M7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-83
0.037
10
ZNRD1-AS1
hsa-miR-125a-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
633-654
0.019
0
6mer
1020-1044
0.005
1
7mer
2164-2181
0.005
0
6mer
8505-8530
0.004
1
6mer
1480-1500
0.001
0
6mer
5236-5258
0.001
0
6mer
5163-5175
0.001
0
C11orf72
hsa-miR-125a-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000446232
Biotype: lincRNA
Gene id: ENSG00000184224
Gene Name: C11orf72
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
653-678
0.033
0
7mer
443-468
0.004
0
RP11-73M7.6
hsa-miR-125a-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608332
Biotype: antisense
Gene id: ENSG00000235790
Gene Name: RP11-73M7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-83
0.037
10
TSIX
hsa-miR-125a-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-42
0.008
Not Conserved
7mer
16870-16884
0.004
0
8mer
26790-26807
0.004
0
7mer
21504-21529
0.004
0
7mer
5248-5272
0.003
1
8mer
6399-6416
0.003
0
7mer
27019-27039
0.002
1
7mer
24325-24344
0.002
0
6mer
21756-21781
0.002
1
6mer
3518-3532
0.001
0
6mer
24695-24717
0.001
1
7mer
27056-27080
0.001
1
6mer
17414-17434
0.001
0
6mer
18603-18618
0.001
1
6mer
8104-8130
0.001
0
6mer
15471-15491
0.000
Not Conserved
RP1-177I10.1
hsa-miR-125a-3p
0.830
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434493
Biotype: lincRNA
Gene id: ENSG00000224605
Gene Name: RP1-177I10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-319
0.037
1
CTC-510F12.6
hsa-miR-125a-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586051
Biotype: sense_intronic
Gene id: ENSG00000267576
Gene Name: CTC-510F12.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-112
0.036
0
SVIL-AS1
hsa-miR-125a-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608994
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
220-236
0.026
1
6mer
286-306
0.010
1
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