LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-125a-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-373E16.3
hsa-miR-125a-3p
0.844
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000497988
Biotype: sense_intronic
Gene id: ENSG00000244738
Gene Name: RP11-373E16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
703-723
0.018
4
7mer
3039-3061
0.016
0
7mer
1905-1919
0.003
1
6mer
481-493
0.002
1
LINC01005
hsa-miR-125a-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039987.1
Biotype: lincRNA
Gene id: NR_039987.1 (gene)
Gene Name: LINC01005
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
466-481
0.011
0
8mer
1564-1580
0.008
0
6mer
2749-2775
0.007
1
9mer
1889-1915
0.006
0
6mer
2543-2560
0.004
0
6mer
692-708
0.003
0
XLOC_013784
hsa-miR-125a-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028432
Biotype: transcript isomorph
Gene id: XLOC_013784
Gene Name: XLOC_013784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
285-306
0.020
1
6mer
43-63
0.012
1
6mer
96-111
0.006
0
RP11-108P20.1
hsa-miR-125a-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592021
Biotype: lincRNA
Gene id: ENSG00000267010
Gene Name: RP11-108P20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
201-218
0.014
1
7mer
350-374
0.008
1
7mer
54-80
0.008
0
7mer
511-530
0.006
1
6mer
1000-1021
0.003
1
CASC9
hsa-miR-125a-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_103849.1
Biotype: lincRNA
Gene id: NR_103849.1 (gene)
Gene Name: CASC9
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
493-511
0.031
1
6mer
1126-1148
0.004
1
6mer
382-395
0.003
1
RP11-887P2.5
hsa-miR-125a-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550287
Biotype: antisense
Gene id: ENSG00000258274
Gene Name: RP11-887P2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-502
0.032
2
6mer
41-65
0.006
1
AC079466.1
hsa-miR-125a-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3087-3107
0.011
1
7mer
3240-3256
0.007
0
6mer
1790-1814
0.006
1
6mer
2327-2344
0.006
1
7mer
1243-1260
0.004
0
6mer
991-1006
0.003
0
6mer
2454-2477
0.002
0
RP11-359N11.1
hsa-miR-125a-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000455973
Biotype: lincRNA
Gene id: ENSG00000230631
Gene Name: RP11-359N11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-271
0.017
2
7mer
57-73
0.017
1
6mer
173-198
0.004
1
AC003665.1
hsa-miR-125a-3p
0.840
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_103857.1
Biotype: antisense
Gene id: NR_103857.1 (gene)
Gene Name: AC003665.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
923-943
0.033
0
6mer
300-320
0.005
1
XLOC_002338
hsa-miR-125a-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004462
Biotype: transcript isomorph
Gene id: XLOC_002338
Gene Name: XLOC_002338
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-447
0.038
5
PCAT29
hsa-miR-125a-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558411
Biotype: lincRNA
Gene id: ENSG00000259641
Gene Name: PCAT29
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1796-1821
0.035
1
6mer
1242-1266
0.002
0
XLOC_013845
hsa-miR-125a-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028472
Biotype: transcript isomorph
Gene id: XLOC_013845
Gene Name: XLOC_013845
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1161-1179
0.008
1
8mer
1224-1242
0.007
0
8mer
909-927
0.005
0
8mer
1098-1116
0.005
0
8mer
1035-1053
0.004
0
6mer
164-188
0.004
1
8mer
972-990
0.004
0
RP11-387D10.2
hsa-miR-125a-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559531
Biotype: antisense
Gene id: ENSG00000259736
Gene Name: RP11-387D10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-320
0.030
8
6mer
201-226
0.008
8
XLOC_011573
hsa-miR-125a-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023205
Biotype: transcript isomorph
Gene id: XLOC_011573
Gene Name: XLOC_011573
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
175-184
0.020
4
7mer
2082-2102
0.009
4
6mer
1886-1903
0.003
2
6mer
1412-1429
0.003
0
6mer
2106-2128
0.002
0
6mer
1336-1360
0.001
1
6mer
1273-1294
0.001
1
AF001548.5
hsa-miR-125a-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574212
Biotype: antisense
Gene id: ENSG00000263335
Gene Name: AF001548.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-176
0.023
9
7mer
728-753
0.011
1
8mer+mismatch
315-338
0.002
0
6mer
235-254
0.002
1
XLOC_002727
hsa-miR-125a-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006125
Biotype: transcript isomorph
Gene id: XLOC_002727
Gene Name: XLOC_002727
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3641-3657
0.030
3
8mer
1886-1908
0.005
0
6mer
2398-2414
0.002
3
XLOC_008695
hsa-miR-125a-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018413
Biotype: transcript isomorph
Gene id: XLOC_008695
Gene Name: XLOC_008695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
780-797
0.021
Not Conserved
7mer
2438-2456
0.010
2
6mer
2128-2146
0.002
1
6mer
358-384
0.002
1
6mer
1536-1554
0.002
1
6mer
1481-1504
0.001
Not Conserved
RP11-630C16.2
hsa-miR-125a-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550874
Biotype: lincRNA
Gene id: ENSG00000257239
Gene Name: RP11-630C16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-330
0.033
0
7mer
142-164
0.004
1
AC003665.1
hsa-miR-125a-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000451140
Biotype: antisense
Gene id: ENSG00000234494
Gene Name: AC003665.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1035-1055
0.033
0
6mer
412-432
0.005
1
RP11-529E10.6
hsa-miR-125a-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000564650
Biotype: sense_overlapping
Gene id: ENSG00000261643
Gene Name: RP11-529E10.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-462
0.037
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept