LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
CTD-2368P22.1
hsa-miR-125a-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000550135
Biotype: antisense
Gene id: ENSG00000176593
Gene Name: CTD-2368P22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-256
0.021
4
8mer+wobble
6007-6024
0.004
0
7mer
5561-5576
0.003
0
8mer
324-337
0.003
2
7mer
1859-1880
0.002
0
7mer
5596-5617
0.002
0
6mer
1578-1603
0.002
0
6mer
2852-2872
0.001
0
6mer
872-898
0.001
0
RP11-159G9.5
hsa-miR-125a-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498458
Biotype: lincRNA
Gene id: ENSG00000229729
Gene Name: RP11-159G9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-90
0.039
9
RP4-548D19.3
hsa-miR-125a-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000607902
Biotype: antisense
Gene id: ENSG00000272661
Gene Name: RP4-548D19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-28
0.039
9
CASC9
hsa-miR-125a-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_103850.1
Biotype: lincRNA
Gene id: NR_103850.1 (gene)
Gene Name: CASC9
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
493-511
0.032
1
6mer
1126-1148
0.004
1
6mer
382-395
0.003
1
XLOC_000585
hsa-miR-125a-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001304
Biotype: transcript isomorph
Gene id: XLOC_000585
Gene Name: XLOC_000585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-38
0.011
1
7mer
112-131
0.009
0
7mer
86-111
0.009
0
7mer
613-626
0.003
1
6mer
1535-1550
0.002
2
6mer
474-500
0.002
0
6mer
1472-1491
0.001
0
6mer
1304-1325
0.001
1
RP11-258C19.7
hsa-miR-125a-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603385
Biotype: lincRNA
Gene id: ENSG00000270189
Gene Name: RP11-258C19.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
676-694
0.017
1
8mer
828-848
0.013
2
7mer
1592-1611
0.008
1
XLOC_011306
hsa-miR-125a-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023266
Biotype: transcript isomorph
Gene id: XLOC_011306
Gene Name: XLOC_011306
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
378-402
0.039
0
XLOC_008301
hsa-miR-125a-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017580
Biotype: transcript isomorph
Gene id: XLOC_008301
Gene Name: XLOC_008301
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-794
0.039
0
RP11-982M15.7
hsa-miR-125a-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553433
Biotype: lincRNA
Gene id: ENSG00000258736
Gene Name: RP11-982M15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-245
0.039
1
TTTY4C
hsa-miR-125a-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000456123
Biotype: lincRNA
Gene id: ENSG00000228296
Gene Name: TTTY4C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-564
0.039
0
XLOC_008302
hsa-miR-125a-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017581
Biotype: transcript isomorph
Gene id: XLOC_008302
Gene Name: XLOC_008302
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-794
0.039
0
TTTY4
hsa-miR-125a-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000436568
Biotype: lincRNA
Gene id: ENSG00000226906
Gene Name: TTTY4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-794
0.039
0
TTTY4B
hsa-miR-125a-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000420149
Biotype: lincRNA
Gene id: ENSG00000235412
Gene Name: TTTY4B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
783-794
0.039
0
XLOC_014114
hsa-miR-125a-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029175
Biotype: transcript isomorph
Gene id: XLOC_014114
Gene Name: XLOC_014114
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1613-1629
0.024
0
7mer
909-927
0.006
0
7mer
321-346
0.005
0
6mer
331-346
0.003
0
XLOC_010514
hsa-miR-125a-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021918
Biotype: transcript isomorph
Gene id: XLOC_010514
Gene Name: XLOC_010514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1927-1937
0.024
0
7mer
528-544
0.006
0
7mer
1577-1598
0.005
Not Conserved
6mer
795-818
0.002
Not Conserved
6mer
1030-1053
0.002
0
LINC00893
hsa-miR-125a-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000451969
Biotype: antisense
Gene id: ENSG00000241769
Gene Name: LINC00893
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-410
0.019
2
6mer
207-228
0.008
2
XLOC_008332
hsa-miR-125a-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017595
Biotype: transcript isomorph
Gene id: XLOC_008332
Gene Name: XLOC_008332
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-563
0.039
0
XLOC_001920
hsa-miR-125a-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004071
Biotype: transcript isomorph
Gene id: XLOC_001920
Gene Name: XLOC_001920
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1208-1229
0.025
0
6mer
910-921
0.008
0
6mer
107-132
0.003
Not Conserved
6mer
295-308
0.003
Not Conserved
AC003958.2
hsa-miR-125a-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000430006
Biotype: antisense
Gene id: ENSG00000234859
Gene Name: AC003958.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-200
0.019
1
7mer
1963-1987
0.008
1
6mer
291-307
0.003
5
6mer
628-653
0.003
1
6mer
449-465
0.003
2
6mer
697-715
0.002
2
7mer
1218-1236
0.001
0
XLOC_000403
hsa-miR-125a-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001146
Biotype: transcript isomorph
Gene id: XLOC_000403
Gene Name: XLOC_000403
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1139-1164
0.031
1
7mer
1056-1082
0.003
1
6mer
1341-1363
0.002
1
6mer
554-576
0.002
1
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