LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
LINC01492
hsa-miR-125a-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000425157
Biotype: lincRNA
Gene id: ENSG00000225564
Gene Name: LINC01492
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-582
0.036
1
6mer
74-96
0.004
1
XLOC_010750
hsa-miR-125a-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022417
Biotype: transcript isomorph
Gene id: XLOC_010750
Gene Name: XLOC_010750
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
534-540
0.040
1
XLOC_007035
hsa-miR-125a-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-219
0.006
0
7mer
700-724
0.004
0
7mer
3749-3771
0.004
0
7mer
2704-2728
0.004
1
7mer
764-786
0.003
Not Conserved
7mer
2018-2042
0.003
1
7mer
9381-9392
0.003
1
7mer
6838-6861
0.002
0
7mer
10038-10059
0.002
1
7mer
568-587
0.002
0
6mer
5270-5288
0.002
2
7mer
1923-1945
0.001
1
6mer
11392-11413
0.001
1
7mer
9340-9364
0.001
0
7mer
9246-9268
0.001
1
6mer
7766-7783
0.001
0
6mer
11836-11862
0.001
0
6mer
6473-6491
0.001
0
6mer
7717-7741
0.000
0
RP11-680F20.6
hsa-miR-125a-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529072
Biotype: antisense
Gene id: ENSG00000254967
Gene Name: RP11-680F20.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-324
0.010
8
7mer
611-630
0.008
7
7mer
344-369
0.008
5
8mer
629-646
0.006
1
6mer
91-111
0.005
9
6mer
759-779
0.002
4
CTD-2576D5.4
hsa-miR-125a-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567344
Biotype: antisense
Gene id: ENSG00000261448
Gene Name: CTD-2576D5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-261
0.040
9
NOP14-AS1
hsa-miR-125a-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512712
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2701-2720
0.032
10
6mer
212-237
0.004
1
7mer
603-620
0.002
0
6mer
1284-1310
0.001
1
6mer
1297-1320
0.000
0
RP11-345M22.1
hsa-miR-125a-3p
0.859
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568751
Biotype: lincRNA
Gene id: ENSG00000260876
Gene Name: RP11-345M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
578-590
0.034
Not Conserved
8mer+wobble
104-127
0.007
Not Conserved
AC010649.1
hsa-miR-125a-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592230
Biotype: antisense
Gene id: ENSG00000267448
Gene Name: AC010649.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-211
0.040
3
RP11-66N24.3
hsa-miR-125a-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555968
Biotype: antisense
Gene id: ENSG00000258727
Gene Name: RP11-66N24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-417
0.014
7
8mer
2889-2910
0.014
8
6mer
2529-2549
0.005
10
6mer
1022-1043
0.003
7
6mer
1113-1139
0.002
7
6mer
2191-2217
0.002
2
RP11-415C15.2
hsa-miR-125a-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512873
Biotype: lincRNA
Gene id: ENSG00000249699
Gene Name: RP11-415C15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-404
0.034
6
6mer
463-489
0.005
7
6mer
1103-1121
0.001
0
RP11-211G3.2
hsa-miR-125a-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000450760
Biotype: lincRNA
Gene id: ENSG00000223401
Gene Name: RP11-211G3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
502-527
0.040
15
LINC00208
hsa-miR-125a-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000304233
Biotype: lincRNA
Gene id: ENSG00000170983
Gene Name: LINC00208
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-296
0.013
0
8mer
493-505
0.011
1
8mer
1851-1866
0.008
1
8mer
1735-1760
0.008
1
PXN-AS1
hsa-miR-125a-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539446
Biotype: antisense
Gene id: ENSG00000255857
Gene Name: PXN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
686-700
0.029
6
7mer
246-269
0.008
3
6mer
33-49
0.002
2
RP11-678G14.4
hsa-miR-125a-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599524
Biotype: lincRNA
Gene id: ENSG00000268240
Gene Name: RP11-678G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-241
0.026
0
6mer
251-267
0.014
0
RP4-640H8.2
hsa-miR-125a-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000373508
Biotype: lincRNA
Gene id: ENSG00000204117
Gene Name: RP4-640H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2010-2031
0.017
1
7mer
593-618
0.009
1
7mer
1875-1896
0.008
1
7mer
1021-1039
0.005
1
6mer
21-37
0.001
1
RP1-29G21.1
hsa-miR-125a-3p
0.852
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578040
Biotype: sense_intronic
Gene id: ENSG00000264598
Gene Name: RP1-29G21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-160
0.039
8
TTLL10-AS1
hsa-miR-125a-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000379317
Biotype: antisense
Gene id: ENSG00000205231
Gene Name: TTLL10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3281-3307
0.003
0
6mer
3198-3224
0.002
0
6mer
3256-3282
0.002
0
6mer
231-245
0.002
0
6mer
3173-3199
0.002
0
6mer
3223-3248
0.002
0
6mer
3090-3116
0.002
0
6mer
3115-3132
0.002
0
6mer
2901-2927
0.002
0
6mer
3032-3057
0.002
0
6mer
2959-2985
0.002
0
6mer
2984-3008
0.002
0
6mer
3065-3091
0.002
Not Conserved
6mer
3007-3024
0.002
0
6mer
2876-2902
0.002
0
6mer
2926-2951
0.001
0
6mer
2818-2835
0.001
0
6mer
2687-2711
0.001
0
6mer
2770-2787
0.001
0
6mer
2745-2762
0.001
0
6mer
1208-1230
0.001
0
6mer
2712-2737
0.001
Not Conserved
MIR7515HG
hsa-miR-125a-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585834
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
151-168
0.020
10
8mer
827-849
0.011
Not Conserved
7mer
714-740
0.009
1
LINC00928
hsa-miR-125a-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_027074.1
Biotype: lincRNA
Gene id: NR_027074.1 (gene)
Gene Name: LINC00928
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-185
0.020
4
7mer
1995-2015
0.009
4
6mer
1887-1898
0.004
2
6mer
1413-1430
0.003
0
6mer
2019-2041
0.002
0
6mer
1337-1361
0.001
1
6mer
1274-1295
0.001
1
RP13-216E22.5
hsa-miR-125a-3p
0.851
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603360
Biotype: sense_overlapping
Gene id: ENSG00000271199
Gene Name: RP13-216E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-92
0.039
0
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