LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_010306
hsa-miR-125a-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021725
Biotype: transcript isomorph
Gene id: XLOC_010306
Gene Name: XLOC_010306
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-163
0.029
1
7mer
1034-1047
0.012
0
CTC-329D1.2
hsa-miR-125a-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507521
Biotype: antisense
Gene id: ENSG00000249637
Gene Name: CTC-329D1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-293
0.033
7
7mer
450-477
0.008
8
CTD-2313F11.3
hsa-miR-125a-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000445660
Biotype: lincRNA
Gene id: ENSG00000248029
Gene Name: CTD-2313F11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-559
0.041
0
RP11-44L9.3
hsa-miR-125a-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564291
Biotype: lincRNA
Gene id: ENSG00000259971
Gene Name: RP11-44L9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
254-271
0.041
5
XLOC_006468
hsa-miR-125a-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012911
Biotype: transcript isomorph
Gene id: XLOC_006468
Gene Name: XLOC_006468
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
457-472
0.011
0
6mer
3345-3371
0.009
1
8mer
1555-1571
0.007
0
7mer
3143-3167
0.005
0
9mer
1880-1906
0.004
0
6mer
683-699
0.003
0
6mer
2534-2551
0.003
0
AC106876.2
hsa-miR-125a-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000463534
Biotype: retained_intron
Gene id: ENSG00000222001
Gene Name: AC106876.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-178
0.039
5
6mer
232-254
0.002
0
RP11-143A12.3
hsa-miR-125a-3p
0.866
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510067
Biotype: lincRNA
Gene id: ENSG00000250198
Gene Name: RP11-143A12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
534-553
0.035
0
6mer
260-278
0.003
0
6mer
49-70
0.003
1
RP11-730N24.2
hsa-miR-125a-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502861
Biotype: lincRNA
Gene id: ENSG00000250524
Gene Name: RP11-730N24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-499
0.036
3
6mer
186-206
0.005
1
DARS-AS1
hsa-miR-125a-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597450
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-231
0.022
10
7mer
954-969
0.019
3
RP11-9G1.3
hsa-miR-125a-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505289
Biotype: lincRNA
Gene id: ENSG00000250241
Gene Name: RP11-9G1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1755-1777
0.033
1
6mer
2384-2399
0.003
2
6mer
2339-2355
0.003
0
6mer
490-512
0.002
0
RP11-554D14.7
hsa-miR-125a-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552154
Biotype: lincRNA
Gene id: ENSG00000257141
Gene Name: RP11-554D14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
383-402
0.041
0
FAM95C
hsa-miR-125a-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_047651.1
Biotype: sense
Gene id: NR_047651.1 (gene)
Gene Name: FAM95C
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
649-664
0.012
1
6mer
2568-2590
0.007
1
6mer
14-35
0.006
0
6mer
223-248
0.006
0
6mer
2506-2521
0.006
1
6mer
2265-2283
0.004
0
XLOC_004286
hsa-miR-125a-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009235
Biotype: transcript isomorph
Gene id: XLOC_004286
Gene Name: XLOC_004286
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
567-586
0.035
0
6mer
293-311
0.003
0
6mer
82-103
0.003
1
XLOC_011329
hsa-miR-125a-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023483
Biotype: transcript isomorph
Gene id: XLOC_011329
Gene Name: XLOC_011329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
657-677
0.027
1
7mer
139-159
0.012
1
6mer
162-182
0.003
Not Conserved
CTD-2561J22.5
hsa-miR-125a-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-550
0.034
1
6mer
4041-4059
0.005
0
6mer
3314-3329
0.001
0
SVIL-AS1
hsa-miR-125a-3p
0.862
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609413
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
245-261
0.023
1
6mer
311-331
0.007
1
6mer
529-556
0.007
0
6mer
424-444
0.004
0
RP11-13K12.1
hsa-miR-125a-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590398
Biotype: lincRNA
Gene id: ENSG00000267506
Gene Name: RP11-13K12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2221-2244
0.003
0
6mer
426-441
0.002
0
6mer
2019-2041
0.002
0
6mer
1857-1872
0.002
0
6mer
627-653
0.002
0
6mer
484-494
0.002
0
6mer
526-547
0.002
0
6mer
1963-1978
0.002
0
6mer
585-600
0.002
0
6mer
1751-1766
0.002
0
6mer
691-706
0.001
0
6mer
744-759
0.001
0
6mer
945-971
0.001
0
6mer
844-865
0.001
0
6mer
802-812
0.001
0
6mer
1486-1501
0.001
0
6mer
1274-1289
0.001
0
6mer
1316-1342
0.001
0
6mer
903-918
0.001
0
6mer
1645-1660
0.001
Not Conserved
6mer
1009-1024
0.001
0
6mer
1703-1713
0.001
Not Conserved
6mer
1544-1554
0.001
Not Conserved
6mer
1433-1448
0.001
0
6mer
1380-1395
0.001
0
6mer
1115-1130
0.001
0
6mer
1597-1607
0.001
Not Conserved
6mer
1215-1236
0.001
0
6mer
1062-1077
0.001
Not Conserved
6mer
1173-1183
0.001
0
Z69666.2
hsa-miR-125a-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000445733
Biotype: antisense
Gene id: ENSG00000228779
Gene Name: Z69666.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-336
0.014
1
7mer
428-446
0.013
1
6mer
292-316
0.007
2
6mer
165-191
0.006
1
TTC39A-AS1
hsa-miR-125a-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564479
Biotype: antisense
Gene id: ENSG00000261664
Gene Name: TTC39A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
701-722
0.015
2
7mer
324-340
0.011
4
8mer
474-500
0.010
1
6mer
573-587
0.004
3
RP11-1E4.1
hsa-miR-125a-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000562143
Biotype: antisense
Gene id: ENSG00000260093
Gene Name: RP11-1E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-329
0.037
Not Conserved
6mer
296-322
0.002
0
7mer
2531-2553
0.001
0
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