LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
RP11-395P17.3
hsa-miR-125a-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_033374.1
Biotype: lincRNA
Gene id: NR_033374.1 (gene)
Gene Name: RP11-395P17.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-91
0.036
0
6mer
220-243
0.002
0
6mer
306-324
0.002
0
6mer
2683-2705
0.001
0
7mer
2281-2305
0.001
0
OVCH1-AS1
hsa-miR-125a-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_073171.1
Biotype: antisense
Gene id: NR_073171.1 (gene)
Gene Name: OVCH1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
986-1000
0.021
2
8mer
604-620
0.019
4
6mer
190-203
0.002
0
MIA-RAB4B
hsa-miR-125a-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037775.1
Biotype: sense
Gene id: NR_037775.1 (gene)
Gene Name: MIA-RAB4B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1367-1392
0.018
6
9mer
1005-1027
0.015
6
6mer
1306-1328
0.007
1
7mer
1094-1121
0.003
4
XLOC_000744
hsa-miR-125a-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001429
Biotype: transcript isomorph
Gene id: XLOC_000744
Gene Name: XLOC_000744
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1450-1465
0.036
2
6mer
1596-1612
0.003
2
6mer
459-482
0.003
1
XLOC_002282
hsa-miR-125a-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003380
Biotype: transcript isomorph
Gene id: XLOC_002282
Gene Name: XLOC_002282
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2280-2306
0.021
2
7mer
967-993
0.010
1
7mer
1451-1476
0.005
1
7mer
1361-1386
0.003
1
6mer
2083-2102
0.003
0
LINC00208
hsa-miR-125a-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_040035.1
Biotype: lincRNA
Gene id: NR_040035.1 (gene)
Gene Name: LINC00208
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-74
0.015
0
8mer
271-283
0.012
1
8mer
1629-1644
0.008
1
8mer
1513-1538
0.008
1
AC010649.1
hsa-miR-125a-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587592
Biotype: antisense
Gene id: ENSG00000267448
Gene Name: AC010649.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-211
0.042
3
XLOC_006856
hsa-miR-125a-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014779
Biotype: transcript isomorph
Gene id: XLOC_006856
Gene Name: XLOC_006856
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-134
0.042
1
CTD-2013N24.2
hsa-miR-125a-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597366
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-183
0.042
8
RP11-484D2.2
hsa-miR-125a-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526220
Biotype: antisense
Gene id: ENSG00000254907
Gene Name: RP11-484D2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
145-167
0.042
6
RP11-5N11.4
hsa-miR-125a-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506865
Biotype: lincRNA
Gene id: ENSG00000248813
Gene Name: RP11-5N11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
400-421
0.042
1
TTTY15
hsa-miR-125a-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000417071
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
102-122
0.042
0
XLOC_001317
hsa-miR-125a-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003544
Biotype: transcript isomorph
Gene id: XLOC_001317
Gene Name: XLOC_001317
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1584-1606
0.016
Not Conserved
8mer
247-261
0.011
1
7mer
1086-1104
0.009
0
6mer
163-178
0.003
1
6mer
1450-1466
0.002
0
GAS6-AS2
hsa-miR-125a-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_044993.1
Biotype: lincRNA
Gene id: NR_044993.1 (gene)
Gene Name: GAS6-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1869-1879
0.027
0
7mer
470-486
0.006
0
7mer
1519-1540
0.005
Not Conserved
6mer
737-760
0.002
Not Conserved
6mer
972-995
0.001
0
RP11-347J14.8
hsa-miR-125a-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427327
Biotype: lincRNA
Gene id: ENSG00000224038
Gene Name: RP11-347J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-58
0.035
Not Conserved
6mer
235-256
0.007
1
GAS6-AS2
hsa-miR-125a-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608651
Biotype: lincRNA
Gene id: ENSG00000272695
Gene Name: GAS6-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1878-1888
0.026
0
7mer
479-495
0.006
0
7mer
1528-1549
0.005
Not Conserved
6mer
746-769
0.002
Not Conserved
6mer
981-1004
0.001
0
RP5-935K16.1
hsa-miR-125a-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602909
Biotype: lincRNA
Gene id: ENSG00000270081
Gene Name: RP5-935K16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-230
0.015
1
7mer
2059-2078
0.010
1
7mer
328-345
0.008
1
7mer
1379-1398
0.005
1
7mer
1244-1268
0.003
1
FZD10-AS1
hsa-miR-125a-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000505807
Biotype: lincRNA
Gene id: ENSG00000250208
Gene Name: FZD10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-563
0.017
0
6mer
240-265
0.005
1
6mer
121-144
0.004
0
8mer
7811-7832
0.003
Not Conserved
7mer
1964-1985
0.003
1
7mer
3894-3916
0.003
3
7mer
1778-1797
0.002
1
6mer
7001-7025
0.002
1
6mer
8817-8837
0.001
Not Conserved
6mer
8792-8817
0.000
0
RP11-144A16.8
hsa-miR-125a-3p
0.868
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000614608
Biotype: lincRNA
Gene id: ENSG00000276422
Gene Name: RP11-144A16.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-58
0.035
Not Conserved
6mer
235-256
0.007
1
XLOC_001308
hsa-miR-125a-3p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003532
Biotype: transcript isomorph
Gene id: XLOC_001308
Gene Name: XLOC_001308
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1636-1657
0.028
0
7mer
590-612
0.009
1
6mer
474-496
0.003
1
6mer
1155-1175
0.002
0
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