LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-125a-3p


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Gene
miRNA
Score
DIANA Links
AC026188.1
hsa-miR-125a-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420000
Biotype: lincRNA
Gene id: ENSG00000223727
Gene Name: AC026188.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-321
0.027
1
7mer
128-150
0.017
1
RP11-54O7.1
hsa-miR-125a-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448179
Biotype: lincRNA
Gene id: ENSG00000230699
Gene Name: RP11-54O7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2803-2824
0.010
1
7mer
395-420
0.009
3
7mer
2412-2435
0.007
1
7mer
1456-1481
0.006
1
7mer
454-469
0.005
0
6mer
385-405
0.004
3
7mer
2060-2086
0.002
0
6mer
1842-1861
0.002
2
AC026188.1
hsa-miR-125a-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000455703
Biotype: lincRNA
Gene id: ENSG00000223727
Gene Name: AC026188.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
618-631
0.029
1
7mer
438-460
0.015
1
XLOC_000730
hsa-miR-125a-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000016
Biotype: transcript isomorph
Gene id: XLOC_000730
Gene Name: XLOC_000730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5309-5330
0.023
0
7mer
273-299
0.007
3
9mer
5075-5089
0.006
1
7mer
114-131
0.005
0
6mer
642-660
0.003
1
6mer
3013-3040
0.000
0
CTD-2525I3.3
hsa-miR-125a-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593857
Biotype: antisense
Gene id: ENSG00000268015
Gene Name: CTD-2525I3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
15-35
0.026
5
7mer
209-233
0.018
1
XLOC_013708
hsa-miR-125a-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028355
Biotype: transcript isomorph
Gene id: XLOC_013708
Gene Name: XLOC_013708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1453-1468
0.038
0
6mer
738-756
0.005
0
RP11-159G9.5
hsa-miR-125a-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000623596
Biotype: lincRNA
Gene id: ENSG00000229729
Gene Name: RP11-159G9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
456-481
0.044
9
RP11-706O15.5
hsa-miR-125a-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000424415
Biotype: lincRNA
Gene id: ENSG00000205663
Gene Name: RP11-706O15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1737-1762
0.030
1
7mer
1436-1447
0.009
1
6mer
543-559
0.005
1
LINC01508
hsa-miR-125a-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436671
Biotype: lincRNA
Gene id: ENSG00000231107
Gene Name: LINC01508
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
554-570
0.043
Not Conserved
AC087501.1
hsa-miR-125a-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000445617
Biotype: antisense
Gene id: ENSG00000225751
Gene Name: AC087501.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-626
0.043
Not Conserved
CTA-221G9.7
hsa-miR-125a-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000454253
Biotype: lincRNA
Gene id: ENSG00000236641
Gene Name: CTA-221G9.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
393-419
0.043
1
CTD-2525I3.6
hsa-miR-125a-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594379
Biotype: antisense
Gene id: ENSG00000269535
Gene Name: CTD-2525I3.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1876-1893
0.027
0
7mer
1733-1755
0.007
0
6mer
1294-1312
0.004
0
6mer
273-287
0.003
1
6mer
1151-1178
0.002
0
XLOC_011693
hsa-miR-125a-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024250
Biotype: transcript isomorph
Gene id: XLOC_011693
Gene Name: XLOC_011693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-268
0.040
0
7mer
659-671
0.003
Not Conserved
XLOC_008212
hsa-miR-125a-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017364
Biotype: transcript isomorph
Gene id: XLOC_008212
Gene Name: XLOC_008212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
653-672
0.026
1
7mer
357-381
0.007
1
6mer
953-970
0.006
3
6mer
599-619
0.003
1
RP11-61I13.3
hsa-miR-125a-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607675
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1291-1310
0.024
10
8mer
3607-3627
0.019
7
RP3-333B15.5
hsa-miR-125a-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000611020
Biotype: lincRNA
Gene id: ENSG00000273838
Gene Name: RP3-333B15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-434
0.043
0
AC010649.1
hsa-miR-125a-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590698
Biotype: antisense
Gene id: ENSG00000267448
Gene Name: AC010649.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-211
0.043
3
CTD-3025N20.3
hsa-miR-125a-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606963
Biotype: lincRNA
Gene id: ENSG00000272010
Gene Name: CTD-3025N20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-369
0.043
1
CTB-131K11.1
hsa-miR-125a-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582842
Biotype: antisense
Gene id: ENSG00000266469
Gene Name: CTB-131K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
522-535
0.026
9
7mer
209-225
0.017
6
XLOC_004606
hsa-miR-125a-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010141
Biotype: transcript isomorph
Gene id: XLOC_004606
Gene Name: XLOC_004606
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-125a-3p
Sequence: acaggugagguucuugggagcc
MirBase ID: MIMAT0004602
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-286
0.036
7
7mer
1744-1768
0.007
0
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