LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
XLOC_003704
hsa-miR-124-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008261
Biotype: transcript isomorph
Gene id: XLOC_003704
Gene Name: XLOC_003704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
588-599
0.016
2
6mer
2188-2200
0.007
3
6mer
649-670
0.002
1
CTD-2336O2.1
hsa-miR-124-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517959
Biotype: antisense
Gene id: ENSG00000253982
Gene Name: CTD-2336O2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
639-659
0.025
1
RP11-59E19.4
hsa-miR-124-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562158
Biotype: lincRNA
Gene id: ENSG00000261364
Gene Name: RP11-59E19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-310
0.015
0
7mer
235-250
0.011
0
AC069277.2
hsa-miR-124-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432743
Biotype: lincRNA
Gene id: ENSG00000189229
Gene Name: AC069277.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-448
0.025
1
RP11-804F13.1
hsa-miR-124-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549364
Biotype: lincRNA
Gene id: ENSG00000258119
Gene Name: RP11-804F13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-123
0.025
3
XLOC_011549
hsa-miR-124-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023757
Biotype: transcript isomorph
Gene id: XLOC_011549
Gene Name: XLOC_011549
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-190
0.025
2
MYLK-AS2
hsa-miR-124-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000510827
Biotype: antisense
Gene id: ENSG00000250174
Gene Name: MYLK-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-231
0.025
4
RP1-59D14.5
hsa-miR-124-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574290
Biotype: antisense
Gene id: ENSG00000263345
Gene Name: RP1-59D14.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6-25
0.022
Not Conserved
6mer
69-91
0.003
Not Conserved
HAND2-AS1
hsa-miR-124-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507062
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
946-966
0.013
4
7mer
3810-3821
0.010
1
6mer
1701-1725
0.002
4
FAM170B-AS1
hsa-miR-124-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443389
Biotype: antisense
Gene id: ENSG00000234736
Gene Name: FAM170B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-55
0.019
0
6mer
256-271
0.006
2
RP11-328C8.4
hsa-miR-124-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547824
Biotype: antisense
Gene id: ENSG00000257225
Gene Name: RP11-328C8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2376-2399
0.023
1
6mer
1492-1515
0.002
6
XLOC_000190
hsa-miR-124-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000937
Biotype: transcript isomorph
Gene id: XLOC_000190
Gene Name: XLOC_000190
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4211-4235
0.024
0
6mer
1512-1535
0.001
1
FLJ41278
hsa-miR-124-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535058
Biotype: lincRNA
Gene id: ENSG00000255693
Gene Name: FLJ41278
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3251-3270
0.020
1
7mer
1343-1365
0.004
1
6mer
2040-2053
0.001
1
RP3-412A9.16
hsa-miR-124-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609017
Biotype: antisense
Gene id: ENSG00000273387
Gene Name: RP3-412A9.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
953-973
0.025
1
MIR663AHG
hsa-miR-124-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000596111
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
8-32
0.022
2
6mer
285-296
0.003
Not Conserved
XLOC_000730
hsa-miR-124-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000016
Biotype: transcript isomorph
Gene id: XLOC_000730
Gene Name: XLOC_000730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2473-2490
0.005
1
7mer
706-725
0.004
2
7mer
3838-3854
0.004
0
6mer
869-887
0.004
1
7mer
1526-1547
0.003
3
7mer
3937-3960
0.002
1
6mer
3470-3488
0.001
0
6mer
2236-2250
0.001
Not Conserved
6mer
1837-1859
0.001
Not Conserved
6mer
3831-3854
0.000
1
XLOC_011193
hsa-miR-124-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023891
Biotype: transcript isomorph
Gene id: XLOC_011193
Gene Name: XLOC_011193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-144
0.025
0
LINC01224
hsa-miR-124-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1683-1696
0.010
1
6mer
646-671
0.010
1
6mer
1641-1664
0.003
0
6mer
1607-1633
0.002
0
N4BP2L2-IT2
hsa-miR-124-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_026928.1
Biotype: sense
Gene id: NR_026928.1 (gene)
Gene Name: N4BP2L2-IT2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
429-445
0.006
2
6mer
450-463
0.005
1
6mer
3489-3514
0.004
4
6mer
3955-3969
0.003
1
6mer
1386-1399
0.003
2
6mer
2635-2650
0.002
1
6mer
2392-2417
0.002
0
LINC00511
hsa-miR-124-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580500
Biotype: lincRNA
Gene id: ENSG00000227036
Gene Name: LINC00511
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
474-487
0.017
1
6mer
513-529
0.005
4
6mer
385-399
0.003
0
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