LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
RP11-232D9.3
hsa-miR-124-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000446495
Biotype: lincRNA
Gene id: ENSG00000230159
Gene Name: RP11-232D9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
353-369
0.026
1
CXorf24
hsa-miR-124-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000357412
Biotype: lincRNA
Gene id: ENSG00000196741
Gene Name: CXorf24
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
419-443
0.012
0
7mer
380-398
0.009
3
6mer
342-354
0.004
1
RP11-785H5.1
hsa-miR-124-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000622602
Biotype: lincRNA
Gene id: ENSG00000256537
Gene Name: RP11-785H5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4606-4618
0.018
Not Conserved
7mer
2204-2225
0.006
2
6mer
3919-3942
0.002
1
XLOC_013446
hsa-miR-124-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027831
Biotype: transcript isomorph
Gene id: XLOC_013446
Gene Name: XLOC_013446
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
611-631
0.023
1
6mer
117-140
0.003
1
RP11-513M16.8
hsa-miR-124-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000609982
Biotype: antisense
Gene id: ENSG00000273226
Gene Name: RP11-513M16.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-430
0.020
1
6mer
48-66
0.005
0
CTD-2336O2.1
hsa-miR-124-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518481
Biotype: antisense
Gene id: ENSG00000253982
Gene Name: CTD-2336O2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-115
0.025
1
XLOC_000957
hsa-miR-124-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000094
Biotype: transcript isomorph
Gene id: XLOC_000957
Gene Name: XLOC_000957
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1629-1642
0.012
4
6mer
301-317
0.006
1
6mer
511-535
0.004
1
6mer
1990-2012
0.003
1
RP5-1074L1.1
hsa-miR-124-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449169
Biotype: antisense
Gene id: ENSG00000227963
Gene Name: RP5-1074L1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1633-1646
0.012
4
6mer
305-321
0.006
1
6mer
515-539
0.004
1
6mer
1994-2016
0.003
1
RP11-785H5.1
hsa-miR-124-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544420
Biotype: lincRNA
Gene id: ENSG00000256537
Gene Name: RP11-785H5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4647-4659
0.018
Not Conserved
7mer
2245-2266
0.006
2
6mer
3960-3983
0.002
1
AC018647.3
hsa-miR-124-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000458087
Biotype: lincRNA
Gene id: ENSG00000227544
Gene Name: AC018647.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1192-1214
0.016
0
6mer
957-984
0.006
1
6mer
995-1013
0.004
1
CAND1.11
hsa-miR-124-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_103765.1
Biotype: sense
Gene id: NR_103765.1 (gene)
Gene Name: CAND1.11
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-82
0.018
0
6mer
293-306
0.004
1
6mer
951-970
0.003
1
RP5-1111A8.3
hsa-miR-124-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414995
Biotype: antisense
Gene id: ENSG00000229242
Gene Name: RP5-1111A8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
646-661
0.016
1
6mer
774-799
0.006
4
6mer
35-50
0.004
1
AC018647.3
hsa-miR-124-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000432866
Biotype: lincRNA
Gene id: ENSG00000227544
Gene Name: AC018647.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1337-1359
0.015
0
6mer
1102-1129
0.006
1
6mer
1140-1158
0.004
1
MAGEA8-AS1
hsa-miR-124-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_102703.1
Biotype: antisense
Gene id: NR_102703.1 (gene)
Gene Name: MAGEA8-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-126
0.025
1
RP5-1063M23.1
hsa-miR-124-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000505276
Biotype: lincRNA
Gene id: ENSG00000250770
Gene Name: RP5-1063M23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1864-1883
0.025
1
AC011525.4
hsa-miR-124-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590611
Biotype: lincRNA
Gene id: ENSG00000267465
Gene Name: AC011525.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1578-1582
0.014
12
6mer
308-321
0.005
4
6mer
977-999
0.003
3
6mer
389-409
0.002
1
6mer
444-458
0.001
1
BHLHE40-AS1
hsa-miR-124-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615017
Biotype: antisense
Gene id: ENSG00000235831
Gene Name: BHLHE40-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-102
0.014
3
6mer
196-218
0.006
3
6mer
962-982
0.005
1
XLOC_002148
hsa-miR-124-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004299
Biotype: transcript isomorph
Gene id: XLOC_002148
Gene Name: XLOC_002148
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
358-381
0.025
1
RP11-282K24.3
hsa-miR-124-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4867-4882
0.010
Not Conserved
6mer
5358-5382
0.005
1
7mer
1308-1328
0.005
3
6mer
421-440
0.003
0
6mer
1223-1250
0.002
1
RP11-523O18.5
hsa-miR-124-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428825
Biotype: antisense
Gene id: ENSG00000233665
Gene Name: RP11-523O18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1123-1140
0.025
0
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