LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
XLOC_014103
hsa-miR-124-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029159
Biotype: transcript isomorph
Gene id: XLOC_014103
Gene Name: XLOC_014103
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
320-343
0.026
1
XLOC_010987
hsa-miR-124-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022407
Biotype: transcript isomorph
Gene id: XLOC_010987
Gene Name: XLOC_010987
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-154
0.016
1
6mer
756-779
0.006
2
6mer
498-516
0.004
1
FAM226B
hsa-miR-124-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602508
Biotype: sense_intronic
Gene id: ENSG00000269911
Gene Name: FAM226B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
986-1011
0.026
1
RP11-464D20.6
hsa-miR-124-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583426
Biotype: sense_intronic
Gene id: ENSG00000264546
Gene Name: RP11-464D20.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1369-1391
0.015
1
7mer
607-614
0.011
0
ZNRD1-AS1
hsa-miR-124-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
79-96
0.009
0
7mer
6394-6411
0.009
1
6mer
9160-9186
0.006
1
6mer
5461-5487
0.003
1
RP13-36G14.4
hsa-miR-124-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603952
Biotype: sense_intronic
Gene id: ENSG00000270223
Gene Name: RP13-36G14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
382-393
0.026
0
RP4-779E11.3
hsa-miR-124-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_033917.1
Biotype: lincRNA
Gene id: NR_033917.1 (gene)
Gene Name: RP4-779E11.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
611-631
0.023
1
6mer
117-140
0.003
1
RP11-18C24.8
hsa-miR-124-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000615562
Biotype: lincRNA
Gene id: ENSG00000278344
Gene Name: RP11-18C24.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-280
0.026
0
XLOC_003546
hsa-miR-124-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007535
Biotype: transcript isomorph
Gene id: XLOC_003546
Gene Name: XLOC_003546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2872-2895
0.009
1
7mer
948-969
0.007
1
7mer
1384-1401
0.004
1
6mer
2505-2531
0.004
1
6mer
287-300
0.002
1
AC078941.1
hsa-miR-124-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414404
Biotype: lincRNA
Gene id: ENSG00000236780
Gene Name: AC078941.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
453-478
0.026
1
MKNK1-AS1
hsa-miR-124-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602433
Biotype: antisense
Gene id: ENSG00000269956
Gene Name: MKNK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1038-1057
0.015
6
6mer
2427-2434
0.006
1
6mer
2025-2044
0.004
5
6mer
1323-1346
0.002
0
XLOC_014251
hsa-miR-124-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029427
Biotype: transcript isomorph
Gene id: XLOC_014251
Gene Name: XLOC_014251
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1404-1420
0.017
2
6mer
379-396
0.006
6
6mer
1366-1382
0.003
0
MIR3179-1
hsa-miR-124-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000546674
Biotype: lincRNA
Gene id: ENSG00000257264
Gene Name: MIR3179-1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-52
0.026
0
RBM26-AS1
hsa-miR-124-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606049
Biotype: antisense
Gene id: ENSG00000227354
Gene Name: RBM26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-30
0.026
1
AC010096.1
hsa-miR-124-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443897
Biotype: lincRNA
Gene id: ENSG00000234597
Gene Name: AC010096.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1580-1591
0.017
1
6mer
454-465
0.004
1
6mer
1112-1136
0.003
2
6mer
1002-1022
0.001
0
RP11-210M15.2
hsa-miR-124-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559008
Biotype: lincRNA
Gene id: ENSG00000259495
Gene Name: RP11-210M15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6174-6187
0.009
1
6mer
6476-6486
0.007
6
7mer
4777-4794
0.004
1
7mer
3877-3899
0.003
1
6mer
4186-4203
0.002
1
6mer
3574-3594
0.001
1
XLOC_008538
hsa-miR-124-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
350-363
0.013
0
6mer
115-128
0.007
0
6mer
1271-1290
0.005
0
CXorf24
hsa-miR-124-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000624822
Biotype: lincRNA
Gene id: ENSG00000196741
Gene Name: CXorf24
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
419-443
0.012
0
7mer
380-398
0.010
3
6mer
342-354
0.004
1
PWRN2
hsa-miR-124-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567246
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2459-2469
0.013
1
6mer
597-608
0.006
1
6mer
3693-3712
0.005
1
6mer
2269-2292
0.002
0
RP11-130F10.1
hsa-miR-124-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507023
Biotype: antisense
Gene id: ENSG00000250131
Gene Name: RP11-130F10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-139
0.014
0
7mer
1307-1331
0.012
2
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