LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-124-3p


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Gene
miRNA
Score
DIANA Links
XLOC_002198
hsa-miR-124-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004327
Biotype: transcript isomorph
Gene id: XLOC_002198
Gene Name: XLOC_002198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-86
0.023
1
6mer
598-609
0.003
1
LINC00211
hsa-miR-124-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418746
Biotype: lincRNA
Gene id: ENSG00000237803
Gene Name: LINC00211
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-434
0.020
Not Conserved
6mer
446-462
0.006
1
RP11-180P8.3
hsa-miR-124-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581596
Biotype: lincRNA
Gene id: ENSG00000266411
Gene Name: RP11-180P8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-333
0.020
2
6mer
423-447
0.007
4
RP11-304C12.3
hsa-miR-124-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531479
Biotype: lincRNA
Gene id: ENSG00000254443
Gene Name: RP11-304C12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2433-2446
0.014
1
6mer
2205-2220
0.006
1
6mer
174-198
0.004
1
6mer
251-270
0.002
1
LINC00402
hsa-miR-124-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000419499
Biotype: lincRNA
Gene id: ENSG00000235532
Gene Name: LINC00402
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-385
0.011
1
6mer
2784-2800
0.008
4
6mer
2952-2973
0.005
1
6mer
609-621
0.002
1
C1orf132
hsa-miR-124-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13835-13855
0.008
1
7mer
1165-1179
0.004
0
6mer
13967-13979
0.003
1
6mer
4453-4468
0.002
5
7mer
1122-1139
0.002
2
6mer
5023-5040
0.002
0
6mer
3430-3448
0.002
3
6mer
6920-6937
0.001
0
6mer
9056-9083
0.001
1
6mer
5516-5532
0.001
1
6mer
9037-9061
0.000
0
RP11-594N15.3
hsa-miR-124-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000565862
Biotype: sense_overlapping
Gene id: ENSG00000260398
Gene Name: RP11-594N15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3150-3177
0.011
1
6mer
3660-3681
0.009
3
6mer
450-469
0.004
1
6mer
1533-1545
0.002
2
CTD-2251F13.1
hsa-miR-124-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000508469
Biotype: lincRNA
Gene id: ENSG00000248975
Gene Name: CTD-2251F13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
134-155
0.016
1
6mer
757-780
0.006
2
6mer
499-517
0.004
1
RP11-336K24.12
hsa-miR-124-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610146
Biotype: antisense
Gene id: ENSG00000273002
Gene Name: RP11-336K24.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1517-1535
0.015
4
7mer
203-225
0.012
1
LOC100506990
hsa-miR-124-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_040092.1
Biotype: lincRNA
Gene id: NR_040092.1 (gene)
Gene Name: LOC100506990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1643-1670
0.016
0
6mer
2054-2076
0.005
0
6mer
397-420
0.003
1
6mer
370-390
0.003
1
RP11-504I13.3
hsa-miR-124-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583287
Biotype: antisense
Gene id: ENSG00000263982
Gene Name: RP11-504I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-96
0.026
2
RP11-266K4.14
hsa-miR-124-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618256
Biotype: lincRNA
Gene id: ENSG00000275367
Gene Name: RP11-266K4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2640-2659
0.019
0
6mer
3051-3067
0.007
0
CASC15
hsa-miR-124-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444265
Biotype: lincRNA
Gene id: ENSG00000272168
Gene Name: CASC15
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
361-381
0.019
2
6mer
660-677
0.004
4
6mer
978-1003
0.004
0
XLOC_010966
hsa-miR-124-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022669
Biotype: transcript isomorph
Gene id: XLOC_010966
Gene Name: XLOC_010966
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-224
0.019
2
6mer
255-272
0.004
1
6mer
1111-1124
0.002
1
6mer
1090-1114
0.001
0
LINC01527
hsa-miR-124-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419578
Biotype: antisense
Gene id: ENSG00000224308
Gene Name: LINC01527
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1201-1220
0.026
0
LINC00698
hsa-miR-124-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468072
Biotype: lincRNA
Gene id: ENSG00000244342
Gene Name: LINC00698
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1922-1935
0.018
1
6mer
1725-1738
0.005
3
6mer
56-74
0.004
0
RP11-627G23.1
hsa-miR-124-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532886
Biotype: retained_intron
Gene id: ENSG00000255545
Gene Name: RP11-627G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-179
0.011
1
7mer
492-518
0.010
3
6mer
104-129
0.004
1
6mer
2844-2867
0.001
0
RP11-304C12.3
hsa-miR-124-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532430
Biotype: lincRNA
Gene id: ENSG00000254443
Gene Name: RP11-304C12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1270-1283
0.014
1
6mer
1042-1057
0.006
1
6mer
187-211
0.004
1
6mer
264-283
0.002
1
RP11-17G12.2
hsa-miR-124-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540410
Biotype: antisense
Gene id: ENSG00000256897
Gene Name: RP11-17G12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-94
0.017
1
6mer
4-29
0.009
5
RP11-154D6.1
hsa-miR-124-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591156
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-124-3p
Sequence: uaaggcacgcggugaaugcc
MirBase ID: MIMAT0000422
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-430
0.026
1
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